Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq101 178 1e-39
seq2 125 7e-24
seq1 120 3e-22
seq124 105 7e-18
>seq101
Length=835023
Score = 178 bits (196), Expect = 1e-39
Identities = 333/482 (69%), Gaps = 12/482 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 111905 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 111846
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
|| | ||||| ||| | |||| | | | || || || | |||||| || |||
Sbjct 111845 GCAGACTTGTAAATCTTCTCGTTGCCAA---GTGCCACAAGAAGACGGTCGGCAACAAAC 111789
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|||||||||||| |||| || | || | ||||| ||| |||| ||||| || ||
Sbjct 111788 TCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA-AGGCAGTGCCTC 111730
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
||| || || ||||||||| ||| |||||||||| ||| || | || | | |
Sbjct 111729 GGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACGAATGATCTGCTT 111670
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| | || | | ||| || | | | || || |||||| |||| ||||||
Sbjct 111669 GCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTC 111610
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
|| | |||||||| |||||| ||| |||||||| |||||||| || || || |||||
Sbjct 111609 ATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAG 111550
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || |||| |||||| || ||||| | ||||| ||||| |||||||| ||
Sbjct 111549 CCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAAC 111490
Query 133041 CAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
||| |||| | | || | || ||||| | ||| |||||| || | ||||| ||||||
Sbjct 111489 CAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG--GATCCACCGAATAGCCCAATCGGCC 111432
Query 133099 TT 133100
||
Sbjct 111431 TT 111430
Score = 109 bits (120), Expect = 5e-19
Identities = 190/276 (69%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||| || ||||| || || | || ||||| | ||| ||||| |||||||||
Sbjct 111309 GTAGGTATCAATGAGCAATGAGTAGGTCTCAGAGTGGATGTTTTCCATCATGATTTGAAA 111250
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||||| || ||||| | ||| || || ||| ||||| |||| ||
Sbjct 111249 ACCATAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCTGAATCGCTCAACCAAGTT 111190
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||| ||||||||||| || |||||| || ||||| || | ||| ||| || |
Sbjct 111189 TTCATTGACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGATGTGAGAGATAAAGAACTG 111130
Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| | ||| || | ||||||| | ||||||||||| || | |||||
Sbjct 111129 CTCGTCGGAAGTCAGACGATTGTTCCAGTCGTGTTGATCCTTGGACAGATCAATTTCCTC 111070
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| || ||||||||
Sbjct 111069 GGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 111034
>seq2
Length=1180426
Score = 125 bits (138), Expect = 7e-24
Identities = 163/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | |||| | || || |||| ||||| |||||||||||| | ||
Sbjct 395633 TCCGACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 395691
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | ||| ||||| ||||| || || | || ||||| | ||||||
Sbjct 395692 CCAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTA 395751
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || ||||||| ||
Sbjct 395752 CAACATCCAGAAGGAGAGC-ACTCTTCACCTGGTGCTCCG 395790
>seq1
Length=5508434
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| |||| |||||| | | || | | |
Sbjct 3987196 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 3987137
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| || ||| ||||||||||||| || |
Sbjct 3987136 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 3987077
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| ||||| || || | || |||||| ||||||||||||||||||||
Sbjct 3987076 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 3987017
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || | || || |||
Sbjct 3987016 AATCTACCCTTCACCTCGTCCTCCGT 3986991
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
||||| || |||||||| | || |||||| || | |||| | | | |||| ||||
Sbjct 3987466 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAGTC 3987408
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| ||||| || || | || || ||||| || || | ||| || ||
Sbjct 3987407 GAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAA 3987348
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
||||| || |||| ||||||||| ||||||||||||||| |||||
Sbjct 3987347 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 3987300
>seq124
Length=2242402
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 2075866 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 2075807
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| || || |||||||||||| | || || ||||| |
Sbjct 2075806 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 2075747
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | ||||| ||| ||||||||||||||| |||
Sbjct 2075746 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 2075687
Query 38433 G 38433
|
Sbjct 2075686 G 2075686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171618341760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |