Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq102 298 7e-76 seq168 102 1e-16 seq134 100 4e-16 seq35 93.3 5e-14 >seq102 Length=2690835 Score = 298 bits (330), Expect = 7e-76 Identities = 994/1533 (65%), Gaps = 35/1533 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || |||| || ||||| | ||| || || || || || || Sbjct 1199858 TCATCCTCCTCCTTGAACTTCTCGGCATCGGAAAGCATGCGCTCGATATCCTCCTTGGAC 1199917 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || ||||||| | ||| || || | | |||| || | Sbjct 1199918 AAGCGACCCTTGTCGTTGGTGATGATAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 1199977 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||| | |||||| | || | || || || | Sbjct 1199978 GCGGAGACGTTCATGATACCGTTGGCATCGAGATCGAAGGTAACCTCGATCTGAGGAACA 1200037 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||||| || || | || || | || | | |||| ||| | Sbjct 1200038 CCACGGGGGGCAGGGGGAATGCCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 1200097 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTG 6866 | || || ||||| || || || | ||| | ||||| || || || || Sbjct 1200098 GTGCGCTGGCGCTCACCCTCGTAAACCTGAATGAGGACACCG--GGCTGGTTGTCGGAGA 1200155 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | ||||| | ||||| || || || | ||||| | | || Sbjct 1200156 AGGTAGAGAAGACCTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 1200215 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| || ||||| ||| |||| || || || ||||| | ||||| ||| | | Sbjct 1200216 TCATCATGCCACCAGCAGTCTCGATACCGAGGGAGAGAGGGGCAACGTC---GAGAAGGA 1200272 Query 6987 GG-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCG 7037 || ||| || || || | | ||||| | | |||||||| || || | Sbjct 1200273 GGATCTCGCTGGTGGACTTGGAGCTGGTG---TCACCAGACAGAATGGCGGCCTGAACGG 1200329 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 1200330 CGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 1200389 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || | | | | || | ||||| || || || |||||||| | |||| Sbjct 1200390 AGTAGTCGGTAATGAGCTTCTGGACACGGGGGATACGGGTGGAGCCACCGACGAGGACGA 1200449 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || |||||||| || | ||| || ||||| || | | Sbjct 1200450 TCTCGTGGACGAGGCTCTTATCGATTTTCGCGTCGGCGAGGACACGGTCGACGGGCTGGA 1200509 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || ||||| | ||| || || ||||| ||||| || ||||| ||||| || | Sbjct 1200510 TAGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCTCGGGTGATGGAGGTGT 1200569 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || || || || || | || || || | || || | Sbjct 1200570 AGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCGATAGAGGTCTGCGCGGAGGAGGAAA 1200629 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 |||||||| || ||||| || || || || | ||| ||||| || || || | Sbjct 1200630 GAGTTCGCTTGGCACGCTCGCAGGCAGTGCGGAGACGTCGAAGCGCGCGAACATTGGAGC 1200689 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | |||||| ||||| || | ||| || || | | ||||| || ||| | | Sbjct 1200690 TCAAATCTTTTTTATGCTTTCTTTTGAATTCATTAACAAAGTGGTTAACGAGACGGTTGT 1200749 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || ||||||| ||| || || || || || | ||||| || |||||||| Sbjct 1200750 CGAAGTCCTCGCCACCCAGGTGAGTGTCACCAGCAGTTGACTTGACCTCGAAGATACCCT 1200809 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | | |||||||| || ||||||||||| || || || ||||| |||| Sbjct 1200810 CCTCGATGGTGAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGT 1200869 Query 7578 T-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| || | || | ||||| ||||||||||| || || || || || || || || Sbjct 1200870 TGCGT-TCACCCTCAATCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCG 1200928 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| ||||||||||| | ||||| || || || || || Sbjct 1200929 TTGATGATTCGGAGGACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGGCGC 1200988 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||| |||||||| ||||| || ||||| |||| | || ||| |||||| Sbjct 1200989 TGGCTATCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTGTTAACGGTCTCACCGAGG 1201048 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| || || || ||||| ||||| ||||| || | | Sbjct 1201049 TAGGCCTCAGCGGTCTCACGCATCTTAGTGAGGACCATGGATGAGATCTCCTCGGGGGTG 1201108 Query 7817 AACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC--- 7872 || || | ||| || || || || || || || || ||||| || || |||| Sbjct 1201109 AA-GGTCTTGTTCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTT 1201161 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | ||| | | | | ||||| ||| | ||||||| || ||||| Sbjct 1201162 GTCGATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGCTGAACTT 1201221 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | |||||| || || || || ||||| | ||||||||||| ||||| Sbjct 1201222 GCGGCCGATCAAACGCTTGGCGTCGAAGACGGTGTTCTGAGGGTTCATGGCGACCTGGTT 1201281 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || ||||| ||||| || | || || || ||||| | || || || Sbjct 1201282 CTTGGCGGCATCTCCGATCAGACGCTC---GGTGTCGGTGAAACCGACGAAGGAAGGAGT 1201338 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 |||||||| || |||||||| ||||| || || Sbjct 1201339 GGTTCGATTGCCCTGGTCGTTGGCAATGATATC 1201371 Score = 140 bits (154), Expect = 4e-28 Identities = 362/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || |||||||| ||||| || ||| || | || ||| | | || Sbjct 1587678 AGGTCCTCGAATCGGGCACGGGTGATGGACATAGTGAAGTCCTCACCATCGAAGAGAGAG 1587619 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || || || | || || || | || | || ||||| || ||||| || | Sbjct 1587618 TCAATCTCGATAGTGGCCTGAGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 1587561 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || || || || || | ||||| | ||| ||||| || || Sbjct 1587560 CAGTTCGGAGACGGCGCAGAGCGCGGGGATCGCCGGAGAGATCCTTCTTGCTCTTGCGGG 1587501 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| |||| | | |||||||| | |||||||| || Sbjct 1587500 TGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGACCACCCAGATGG 1587442 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 1587441 GTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTGAGGAGGGACACA 1587382 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | || || ||||| || | ||| | |||| Sbjct 1587381 TCGAAAGTACCACCACCGAGATCGTAGATCAGGACGTTGCGCTC--CTTCTCAG-ACTTA 1587325 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| ||||| || || || || || || || || || || || | Sbjct 1587324 CCGGCGCCAAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGGACG 1587265 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || ||||| || ||||| |||||| Sbjct 1587264 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAG 1587205 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | ||| || | | ||| ||||| || || | | || || || || Sbjct 1587204 GCGGGAACAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCC 1587145 Query 7775 TTCAT 7779 ||||| Sbjct 1587144 TTCAT 1587140 >seq168 Length=1342871 Score = 102 bits (112), Expect = 1e-16 Identities = 224/336 (67%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| || ||||| | ||| || || || ||| | ||||| || || | ||| Sbjct 1279665 ATCGAAATCCTCGCCACCGAGGTGAGTGTCACCGTTGGTGGACTTGACCTCGAAAACACC 1279724 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | || | || | |||||| ||||||||||| || || ||| || Sbjct 1279725 GTTCTGGATCTCCAAGATGGAGATATCAAAGGTACCACCACCAAGATCGTAAACAGCGAC 1279784 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | ||| | || ||| ||||||||||| || | ||| || || || || || Sbjct 1279785 GACCCGGTCGGCCTC------CTTCTCGAGACCGTAGGCCAAAGCAGCGGCAGTAGGCTC 1279838 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||| | ||| ||| ||| ||||||| ||| | ||||| || || ||||| Sbjct 1279839 GTTAACGACACGGAGAACGTTGAGGCCAGAAATCTGACCGGCATCCTTGGTACTCTGTCG 1279898 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || |||||||||||||| ||||| || ||||| |||| | ||| ||| ||| Sbjct 1279899 CTGAGAGTCGTTAAAGTAGGCGGGGACAGTGACGACAGCGTTCTTGATGGGCTTTGAGAG 1279958 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| | || || | || ||||| ||| | || || Sbjct 1279959 ATAAGCCTCAGCCGTTTCCTTCATCTTGTTGAGGAC 1279994 >seq134 Length=152861 Score = 100 bits (110), Expect = 4e-16 Identities = 291/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || || || |||||||||| ||| || ||||||| ||| | || | ||| ||| | Sbjct 57262 TCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGG 57203 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 || ||||| | || || ||| || | || | || || | || ||||||||||| Sbjct 57202 GCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAG 57143 Query 105679 GGTTCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCTTGATTGACATA 105731 || || | || | || | || ||| ||| | ||||| || | ||| || Sbjct 57142 GGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC----TGGTCGACGTA 57087 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 || || || ||| | || || | ||| ||||| | ||||| ||| || || || || Sbjct 57086 TCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTGGT 57027 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || ||| | || | ||||| | ||| |||| | || || || || || Sbjct 57026 ACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGACCGATGCCTCCTGC 56967 Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911 | ||| ||| ||||| || | || ||||| ||||||||||| || ||||| Sbjct 56966 CATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGTCTTC 56907 Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACA 105970 ||| | ||| |||||| || || |||| || || ||| || ||||| |||||||||| Sbjct 56906 CTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGG-CTGAGGGGTACCCGCATTGAACA 56848 Query 105971 GAGTTGGTGTTGCATGAATGAACA 105994 | ||||||| || ||| |||||| Sbjct 56847 GGGTTGGTGAAGCGTGAGTGAACA 56824 >seq35 Length=1002431 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||||| || ||| || |||| ||| Sbjct 485647 ATCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGACACC 485706 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 485707 CTGGTCAATGGAGAGAAGAGACACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 485763 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| ||| | | | |||| || ||||| || |||||||| || || || || | Sbjct 485764 AATC-TGTCGCTCGCCGTCGGTCTTGTCCAGACCATAAGCGATAGCGGCGGCGGTGGGCT 485822 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || || ||| ||||| ||||| | | ||||| || || || |||| Sbjct 485823 CGTTGACAACTCGGAGGACGTTGAGGCCGGCAATGATACCGGCATCCTTGGTAGCCTGTC 485882 Query 7695 GTTG 7698 | || Sbjct 485883 GCTG 485886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131299498760