Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq2 95.1 9e-15 >seq1 Length=5508434 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||||||| || | ||| | || |||| ||||||||| ||||| Sbjct 3986559 CTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 3986618 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||||||| || || | ||| | |||||||||||| |||||| || ||| Sbjct 3986619 AATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATT 3986678 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | || ||||| | |||||||| || || || | || || || Sbjct 3986679 GTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGAC 3986738 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 3986739 GAAAATCTGCAT 3986750 >seq2 Length=1180426 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || |||||||| || || || ||||| || || |||| Sbjct 395793 AGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGG 395734 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || |||||||| || |||| ||||| |||||| Sbjct 395733 CCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 395674 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || || | ||||||||| | || Sbjct 395673 TTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTG 395614 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||| | || || || || ||||||||| || Sbjct 395613 ATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 395572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936722534047