Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq134 201 2e-46 seq101 127 4e-24 >seq134 Length=152861 Score = 201 bits (222), Expect = 2e-46 Identities = 835/1287 (65%), Gaps = 63/1287 (5%) Strand=Plus/Minus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 ||||| ||||||||||| ||||||||||||||| |||||| | ||| | ||||||| Sbjct 57860 CGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAA-CTCACGAGCCTCGG 57802 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | || ||||||||| || || | | ||| | || || || ||||| || |||| || Sbjct 57801 GGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGACAC 57742 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 | ||||| | ||| | | ||||| | |||| || || | ||| || |||||| Sbjct 57741 CAATGGGTCGGTGACGCATGTTGCTGTTGCGG--GCCTCGATGATGGGGTAGTGGTTGAC 57684 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| | ||| | || || | |||||| ||||||||| Sbjct 57683 GTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGAA 57624 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC-AACGC 221711 | | | || ||| |||| | | || ||||| | || || || | Sbjct 57623 GTCGTA---------GCAGCCCTCGTTGTAG---TCAACAAAGGAAGGCAGAGCCAATGA 57576 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTAC 221768 || | || || || || || ||||| || | | | |||| |||||||| || | Sbjct 57575 TG-CGAGATTGCAAACAGCGACCTCATC---GGGAGCACAGTACTCGATGATCTCAGTGC 57520 Query 221769 AGAGGTTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 | |||||| | ||| ||||| ||||||| || || || || || ||| |||| Sbjct 57519 AAAGGTTG--GAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTG-CAGC 57463 Query 221827 -GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 ||||||||||||||| || || ||| || || ||||||| ||| || | || Sbjct 57462 TGTCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACC 57403 Query 221886 AGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCGG 221942 | || | ||||| || | | ||||| ||| | | | || |||||| Sbjct 57402 ACAGCT-TCTGGGCCTT--CATGGTCTTGCG---ACCTTTGCCAGCCTGCTCATACTTCT 57349 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || ||| | || |||| |||||||| || | || || || ||| ||| | Sbjct 57348 CGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGC 57289 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||| ||| |||||| ||| | | ||| | || |||||| || || |||||||||| Sbjct 57288 ACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACA 57229 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | ||| || | || | | || || ||| ||||| ||| || | |||||||| Sbjct 57228 GGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCA 57169 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 | || ||||||| ||| |||||||| ||||| || || | ||| | ||| |||||||||| Sbjct 57168 AGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCT 57109 Query 222183 TGTTGCCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240 ||||||| ||||| || || ||| ||| | |||||||| || || | || | Sbjct 57108 TGTTGCCGCCCTGGTCGACGTATC--GAGCAGTGTTGTTGAAGACACGGAGCATAGGAAT 57051 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 | || ||||| |||||||| || |||||| | ||| ||| | || | | Sbjct 57050 GACACCATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCAC---GGATTCG 56994 Query 222301 G-GCA----GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | ||| || | ||||| || || || || ||||||||||| || ||||||| Sbjct 56993 GTGCACGTTGAGA--CCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGG 56936 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 ||||| ||| || || || ||| ||||| | || | ||| || || || |||| | Sbjct 56935 GTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGC 56876 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCT 222474 |||| | | || || || || ||||| || || ||||| || || ||| || Sbjct 56875 TGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAA-CAGCTTGCT 56817 Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGG 222533 ||||| || | ||| ||||| | ||| | |||||| ||| ||| || | | | | Sbjct 56816 GGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCG-ACAG 56758 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAG 222591 || | |||| ||||| ||| || | ||| ||| || | || || || || Sbjct 56757 CGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCT--TCAGGAG 56700 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| ||| || ||||||||||| || ||||| | | || || || | | | | || Sbjct 56699 GTAGGATCGCTCTAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGAC 56640 Query 222652 CACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||| | ||||| |||| ||||| Sbjct 56639 GATGGCAGAGTCCAACTCCTCTTTGTG 56613 >seq101 Length=835023 Score = 127 bits (140), Expect = 4e-24 Identities = 328/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| || ||||||| | | ||| | | | |||| | |||| ||||| || || Sbjct 111439 TGGGCTATTCGGTGGATCCAGGACAAGAACTCATCTTTTGCCCAGCGTCTGGTTGCTTTC 111498 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||||| || ||||| || || ||||| ||| | || ||| ||||||||||||||||| || Sbjct 111499 GCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTCGCGTCCATCTTCTGGCTCAAGAAG 111558 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || || || |||||||||||||| | || ||||| || Sbjct 111559 CGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTGATGAGGGCCTG 111618 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072 |||| || || ||||| || |||||| |||||| || | | |||| | Sbjct 111619 CACACCGACTTCGCCTGTCT--CCTACAC-TCTCACTTGAAGAACCGAGC-CAGCAAGCA 111674 Query 26073 GA-CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 || | || || ||||||| || ||||| | |||||| ||||||| | Sbjct 111675 GATCATTCGTGAG-ATCATCACCGACGCTGTCAACATCGAGCAGGAGTTCCTGACCGAGG 111733 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAGTAT 26190 ||||||||||| | || ||||||| |||||||| |||| | Sbjct 111734 CACTGCCTTGCGCTCTTCTGGGCATGAAC-TCGGACCTCATGAAGCAATACATCGAGTTT 111792 Query 26191 GTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAACC 26248 || ||||||| ||| | |||| || || || || | | ||| ||| ||| |||| Sbjct 111793 GTTGCCGACCGTCTTCTTGTGGCA-CTTGGCAACGAGAAGATTTACAAGTCTGCC-AACC 111850 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || | | || |||||||||||||| || ||| | | Sbjct 111851 CCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 111910 Query 26309 TCGGCGACTATCA 26321 | || || || || Sbjct 111911 TTGGTGATTACCA 111923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/258 (67%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||| ||||| || ||||||||| Sbjct 111025 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 111084 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTC---TATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| ||| |||| || || | | ||||||||| ||| || Sbjct 111085 TCCAAGGATCAACACGACTGGAACAATCGTCTGACTTCCGACGAGCAGTTCTTTATCTCT 111144 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || |||||||| ||||||||||| || || || || || || ||| || Sbjct 111145 CACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGAGCGA 111204 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| | ||||| || ||||| ||||| || || || Sbjct 111205 TTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAATCATGATG 111264 Query 25714 GAAAATGTGCACTCTGAG 25731 ||||| | ||||||||| Sbjct 111265 GAAAACATCCACTCTGAG 111282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842605604160