Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq134 140 1e-27 seq101 132 1e-25 seq102 122 3e-22 seq129 89.7 2e-12 >seq134 Length=152861 Score = 140 bits (154), Expect = 1e-27 Identities = 338/510 (66%), Gaps = 9/510 (2%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| ||||| |||||||| | ||||||||||| ||||| | Sbjct 57529 ATCTCAGTGCAAAGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGG 57470 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || || |||||||| || ||| | ||| | || || || |||| || |||| || Sbjct 57469 TTGCAGCTGTCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATG 57410 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| | |||| || |||||| ||| Sbjct 57409 GCATACCACAGCTTCTGGGCCTTCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTC 57350 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 |||||| | | | || |||||||| |||||| || || ||||||| || |||| Sbjct 57349 TCGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGG 57290 Query 155880 CAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| || || ||| |||||| ||| || | ||| | Sbjct 57289 CACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAACAGATCGGGGATC 57233 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | || |||| | ||| | || | || || | |||||| ||||| || || Sbjct 57232 CACAGGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGA 57173 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || |||||||| || || | || ||||| || || || || ||| ||| Sbjct 57172 TCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGT 57113 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| || ||||| || || || |||||||| || |||||||||| ||||||||| Sbjct 57112 CGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGA 57053 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || | ||||||||| ||||| ||||| ||| Sbjct 57052 ATGACACCATTGGAGGTGCCGTTGGTACCG 57023 >seq101 Length=835023 Score = 132 bits (146), Expect = 1e-25 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || |||||| | || ||||||||| ||||||||||||||| | Sbjct 111413 TTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCAT 111472 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| |||||||| |||| || ||||| ||||| ||||||||||| | Sbjct 111473 CTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTT 111532 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || ||||| || ||||||||| | | ||||| || || || |||| Sbjct 111533 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACG 111592 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCT 133672 | || ||||| | || |||| || |||||||| || ||| | | || |||||| Sbjct 111593 AGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCT 111648 >seq102 Length=2690835 Score = 122 bits (134), Expect = 3e-22 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| || |||||| || || || || || ||||| || ||||| | ||| Sbjct 1609517 CGACGCTGAATGTATCCAGTTTCAGCAGTCTTGACTGCGGTATCGATCAGACCTTCTCGA 1609576 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | |||| || || || | || | || |||| Sbjct 1609577 CCAGCCATGGCGTGGAAGAAGAACTCTGAGGGGGTGAGGCCACGAAGGTAAGAATTCTCG 1609636 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 || |||||||| |||||||| || | |||| ||||||||||| || || || | | | Sbjct 1609637 ACAAAACCACGAGCCTCGGGAGAGTAGTCGTCTTTGGTAAAGTGAGGAAGAGTGCGATAC 1609696 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATCA 302830 | | ||| | || || ||||| || ||||| | ||||| |||| || || | ||| Sbjct 1609697 TTGAAACCGAAGGGAATGCGCTTGCCCTCAACAATTTGCTGACCCA--CAAGAGCAGTCA 1609754 Query 302831 TCTGCGAAATATT 302843 |||||||||| || Sbjct 1609755 TCTGCGAAATGTT 1609767 Score = 87.8 bits (96), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | || ||||| | | ||||| ||||||||||||||||||||| | | |||| Sbjct 1221617 GAAGCTGCGAGGCACCATAGGCAATCAGACAATCACGCTCCATTTCACCCAGTCTCAGAC 1221676 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 ||||||| |||| | |||||||| || || || || | | | ||||||| | Sbjct 1221677 CACCATCTCGAGAACGACCCTCGGTGGGTTGGCGCGTCAAGATGGCTCGAGGACCGCGTG 1221736 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | || || ||| || | ||||| ||||||||||| ||||| | ||| ||| Sbjct 1221737 ATCGAGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGTTGGTAATAGATGGGTCCGT 1221796 Query 251654 TGAAGATG 251661 |||||||| Sbjct 1221797 TGAAGATG 1221804 >seq129 Length=232671 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| ||| ||||||||||| | || | | || Sbjct 211470 ATGAGTCCACAAATCTCGCAGACGTGGACTCTGAAAGCATCAGATACTTCGAACAAGCGC 211411 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | || || || | |||||| |||||||| |||||||| ||||| Sbjct 211410 TCCTTCAAGAAGGCTGCGGCTCCATGGGCAATCATGCAATCACGTTCCATTTCTCCGAAC 211351 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || |||||||| || | ||| | |||||| ||||||| || || Sbjct 211350 CGCAGACCACCGTCTCTAGCACGACCCTCCACAGGCTGCCGTGT 211307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814035901693