Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq134 125 6e-24 seq1 98.7 9e-16 >seq134 Length=152861 Score = 125 bits (138), Expect = 6e-24 Identities = 463/716 (65%), Gaps = 17/716 (2%) Strand=Plus/Minus Query 139301 GCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 |||| ||||| ||||| || | ||||| ||||||||| |||| ||| || | | Sbjct 57360 GCTCATACTTCTCGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGC 57301 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| | || |||||||| | ||| |||||||| || ||| ||| |||||||||||| Sbjct 57300 ACTCATTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGAT 57241 Query 139421 CCGGAATCCACAAAGCGAACAGCAAAT--CGCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 | || ||||||| || || | ||| | || |||| || |||||| || ||| Sbjct 57240 CGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGGGCT--TCTTCCTTGCCGTGGTT 57183 Query 139479 ACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 || | | ||| ||||||||||| |||||||| || || || || ||||| | Sbjct 57182 CTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAA 57123 Query 139539 TGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 || || | | ||||| || || ||||||| ||| ||| || ||||| || || Sbjct 57122 AGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACG 57063 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGA 139653 | ||| || | ||| | | || |||||||| | ||| ||| | | | Sbjct 57062 GAGCATAGGAATGACACCATTGGAGGTGCCGTTGGTAC--CGGCAATGTAAGAGCCGGTG 57005 Query 139654 GCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA 139713 || |||| || || |||| ||||| || || | | ||||| || | | ||| Sbjct 57004 GCACGGATTCGGTGCACGTTGAGACCGATGCCTCCTGCCATCTTGGAGATCATGGCACAA 56945 Query 139714 -TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA 139772 || | | || ||||| ||||| |||||||| |||| ||| ||||| ||||| Sbjct 56944 GTCTTG-AGGGTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCA 56886 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 || || || || || | || || || ||||| || || ||||| ||||| Sbjct 56885 GGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAA 56826 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 || | | ||||| | | ||| || || | | | | | | || || || ||| Sbjct 56825 CAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCCAGAT 56766 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 ||||||| ||| ||||| | ||| || || || || | | | ||| ||||| || Sbjct 56765 GCCGACAGCGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTT 56706 Query 139953 tttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | || |||||| |||||| |||| ||||| ||||||||||| Sbjct 56705 CAGGAGGTAGGATCG--CTCTAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAATC 56652 >seq1 Length=5508434 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || ||||| ||||| || ||| | | Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || || || || || Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || ||||| || || |||||||||||| | | | || ||||| ||| Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| ||||| || ||| |||| Sbjct 3986570 ATTCAGAAGGAGTCGACCCTTCACCTGGT 3986542 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || ||||| ||||| || |||||||||| || || Sbjct 3987122 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 3987063 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| ||| | | || || || ||||| ||||||||||| || || ||| Sbjct 3987062 CAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTTCAC 3987003 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || | ||||| || Sbjct 3987002 CTCGTCCTCCGTCTTCGCGGTGG 3986980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896537116920