Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq134 271 7e-68
seq1 113 4e-20
seq101 111 2e-19
seq2 102 8e-17
>seq134
Length=152861
Score = 271 bits (300), Expect = 7e-68
Identities = 1010/1552 (65%), Gaps = 67/1552 (4%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||| || || || || || ||| | || | ||| ||| | ||
Sbjct 58150 TTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGGTATAAGGC 58091
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || | ||||| ||||||| ||||||| || | || || ||||| || |
Sbjct 58090 TCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGA 58031
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTG-CGCTTCAGAGCCGCCCAGTCCCA 148438
|||| |||||| | |||| | | || | | ||| || | | ||||||||||
Sbjct 58030 AGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCGA-AGGGTCTCCCAGTCCCA 57972
Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG-CGGCTAGCGGGGC 148497
|| || || ||||||||||||| || |||| || || || | | | || |||
Sbjct 57971 AAGGTCGGAGGGCTTCACGTTCCACATATCAAACTGGAGGATACCCTCAGAT-GCTGGGG 57913
Query 148498 TGCCCTCGTA-CGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCG-CCTCGAG 148555
|||| | | | || ||| || || | | || || |||| ||| | | || |
Sbjct 57912 AACCCTTGAAGCTAGA-GTAAGGACCCTCCTCCTTAGCGAGTT-GCACCGAGGCCGTCAA 57855
Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCCGCCGACTCGCT 148612
|| ||| |||||| ||||| || ||| |||| | | | ||| | | |
Sbjct 57854 AGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTCGGG---GGA 57798
Query 148613 TTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672
||| | ||||| || || || || || || ||||| ||||| || || || |||||
Sbjct 57797 CTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGACACCAAT 57738
Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-GAGCGGATAGTGGTTGCGGTCGA 148731
||| ||||| |||||| | ||| || ||| || || ||||||||| |||||
Sbjct 57737 GGGTCGGTGACGCATGTTGCTGTTGCGGGC-CTCGATGATGGGGTAGTGGTTGACGTCGA 57679
Query 148732 TGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCG 148790
| ||||||| |||| ||||| || || |||| ||| | | | ||| | || |||
Sbjct 57678 TAATCTTGTTCAAG-TTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGAAGTCG 57620
Query 148791 TAC---------TTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCAC 148841
|| |||| || || | | | | || || | || || ||||||||
Sbjct 57619 TAGCAGCCCTCGTTGTAGTCAACAAAGGAAGG---CAGAGCCAATGATGCGAGATTGCAA 57563
Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG---CTGCAT 148898
|| || |||||| || || | |||||| | |||||| | ||| || ||| ||||
Sbjct 57562 ACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGA 57503
Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958
|| | ||||| |||||| || ||||| || | |||||| ||||||||| ||||||
Sbjct 57502 ATGGT---GCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCATG 57446
Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGC 149016
| || ||| ||||| ||| | |||| ||| | | | ||| | ||| ||
Sbjct 57445 AAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCA--CAGCTTCTGGGC-- 57390
Query 149017 GCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGA 149070
||| || || | |||||| | ||||||| || |||||| |||||
Sbjct 57389 ---CTTCATGGTCTT-GCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTCTCGA 57334
Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130
|| | || ||||||||||| | || |||||||||| | ||||||||||| | |||
Sbjct 57333 ACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGT 57274
Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190
|||||| | | || |||||||| ||||||||||| | ||| || || | | | ||
Sbjct 57273 CGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGT 57214
Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250
| || || | ||||| ||| ||| |||||| | | | || | ||
Sbjct 57213 CACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGT 57154
Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGT 149307
| |||||||| ||||||| ||| | |||| || || |||||| ||||||||||
Sbjct 57153 CGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGT 57094
Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC---TGGCAG 149364
|||||| || | ||||||| || || || | |||||| |||| ||| ||| |
Sbjct 57093 CGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGG---AATGACACCATTGGAGG 57037
Query 149365 TGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGA 149424
||||||| ||| | |||| | |||| || || | | ||||||||||| ||||
Sbjct 57036 TGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGACCGA 56977
Query 149425 TGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTC 149482
|||| || ||| | ||| ||||| || | |||| ||| || |||||| || ||
Sbjct 56976 TGCCTCCTGCCAT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTGTCGTAGATACCGTC 56919
Query 149483 GATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCC 149542
||||||||| ||||||| | ||| ||||| || ||| || || | | || ||
Sbjct 56918 GATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACC 56859
Query 149543 GGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACG 149601
|| ||||| ||| || ||||| || || | || |||| ||| | | ||| |
Sbjct 56858 CGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGG-ACATGAGGTTGTAGG 56800
Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATAT 149661
||| || || || || ||||| || || |||||| | ||||| ||||| | ||| |
Sbjct 56799 TCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGT 56740
Query 149662 GCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCT 149721
|||| |||||||| | | ||| | || || || | |||| ||||| ||||
Sbjct 56739 GCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCT 56680
Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
|| |||| ||||| | ||||| || || ||| | | | | ||||| | |||
Sbjct 56679 TGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTC 56628
>seq1
Length=5508434
Score = 113 bits (124), Expect = 4e-20
Identities = 146/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||| | || ||| ||| | ||||| |||||||| |
Sbjct 3986553 GGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCA-TCCTCCAGCTGCTTAC 3986611
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || |||| || ||||||||||| || |||||||| |||||||| ||||| ||
Sbjct 3986612 CAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACT 3986671
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || || | | || || |||| || | || |||||||| || |
Sbjct 3986672 TGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGG 3986731
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 3986732 TCTTGACGAAAATCTGCAT 3986750
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| || || | | | ||||| |||||||| ||
Sbjct 3986782 GTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCA-TCCTCAAGCTGCTTTCC 3986840
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||||||||| || ||||| || ||||| || ||||| |||
Sbjct 3986841 GGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTT 3986900
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | |||||||| | |||||| || | ||||| || || ||||||| ||
Sbjct 3986901 GACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 3986960
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 3986961 CTTGACAAAGATTTGCAT 3986978
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| ||||||||||||||| ||
Sbjct 3987293 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3987352
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||| || ||||||||||| |||||||| |||||| |||
Sbjct 3987353 AGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT 3987412
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| | || | ||||| | || ||| || || | |||| ||| || || ||||
Sbjct 3987413 AACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 3987468
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| || | || || ||||| |||||||| ||||| || ||||||
Sbjct 3987052 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTG 3987111
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | || | || || | | ||| || |||| ||||| |
Sbjct 3987112 TCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATG 3987171
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGA 133650
|| ||||| || || || || ||||
Sbjct 3987172 GTCTTGCCAGTGAGGGTCTTGACGA 3987196
>seq101
Length=835023
Score = 111 bits (122), Expect = 2e-19
Identities = 343/519 (66%), Gaps = 15/519 (3%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || || || || ||||| || ||||| || ||||| | | || ||||| |
Sbjct 111924 CTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 111865
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTA-AAGTATTTCGGCTGGCCCAACTGT-ACGAGC 120468
||| || ||||| |||||| | || || | || | || |||| || || ||
Sbjct 111864 CATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTG--CCAAGTGCCACAAGA 111807
Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528
|| ||||| || |||||||| ||||| | |||| | || |||||||||||| |
Sbjct 111806 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 111747
Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
|| |||| ||| || | ||||||| ||| |||| || || || ||| ||
Sbjct 111746 GCGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATC 111687
Query 120589 GCGAGCATAGTGTGGCCG--GGCATCTTGTGTTCGA-TGCGCGTTCGGTAGTACAGGCAC 120645
| | || | || | ||| || | ||| | || | || |||| | | ||
Sbjct 111686 TCACGAATGATCTGCTTGCTGGC-TCGGTTCTTCAAGTGAGAGT---GTAGGAGA--CAG 111633
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|| ||||| |||||||||||||| || || || || ||||||||| || |||| |||
Sbjct 111632 GCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCA 111573
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGG-CGGCAAAGCTGCCCGAAAAGAACAC 120764
||||||| || | |||||| |||| |||| || ||||| || ||||| |
Sbjct 111572 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGC-ACCACTGAAGAAAAT 111514
Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824
||||| ||| || || || |||| |||| ||| || | | ||||| | |||
Sbjct 111513 ACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTGGAT 111454
Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
|||| || ||||| |||||||| || || | ||| ||
Sbjct 111453 CCACCGAATAGCCCAATCGGCCTTCTTTCGGATGCAAGG 111415
>seq2
Length=1180426
Score = 102 bits (112), Expect = 8e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| |||| || || | | | || || ||||||||||| |||
Sbjct 395767 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCA-TCTTCAAGCTGCTTGCCGGCGA 395709
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| || || ||||||||||| || || || || |||||||| |||||| ||||| |
Sbjct 395708 AGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGT 395649
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||||| | |||||| || | ||||| || || || || || || || |
Sbjct 395648 TGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 395589
Query 133648 CGAAAATCTGCAT 133660
|||| ||||||||
Sbjct 395588 CGAAGATCTGCAT 395576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419657918360
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