Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq134 271 7e-68 seq1 113 4e-20 seq101 111 2e-19 seq2 102 8e-17 >seq134 Length=152861 Score = 271 bits (300), Expect = 7e-68 Identities = 1010/1552 (65%), Gaps = 67/1552 (4%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | ||| ||| | || Sbjct 58150 TTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGGTATAAGGC 58091 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || | ||||| ||||||| ||||||| || | || || ||||| || | Sbjct 58090 TCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGA 58031 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTG-CGCTTCAGAGCCGCCCAGTCCCA 148438 |||| |||||| | |||| | | || | | ||| || | | |||||||||| Sbjct 58030 AGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCGA-AGGGTCTCCCAGTCCCA 57972 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG-CGGCTAGCGGGGC 148497 || || || ||||||||||||| || |||| || || || | | | || ||| Sbjct 57971 AAGGTCGGAGGGCTTCACGTTCCACATATCAAACTGGAGGATACCCTCAGAT-GCTGGGG 57913 Query 148498 TGCCCTCGTA-CGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCG-CCTCGAG 148555 |||| | | | || ||| || || | | || || |||| ||| | | || | Sbjct 57912 AACCCTTGAAGCTAGA-GTAAGGACCCTCCTCCTTAGCGAGTT-GCACCGAGGCCGTCAA 57855 Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCCGCCGACTCGCT 148612 || ||| |||||| ||||| || ||| |||| | | | ||| | | | Sbjct 57854 AGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTCGGG---GGA 57798 Query 148613 TTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672 ||| | ||||| || || || || || || ||||| ||||| || || || ||||| Sbjct 57797 CTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGACACCAAT 57738 Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-GAGCGGATAGTGGTTGCGGTCGA 148731 ||| ||||| |||||| | ||| || ||| || || ||||||||| ||||| Sbjct 57737 GGGTCGGTGACGCATGTTGCTGTTGCGGGC-CTCGATGATGGGGTAGTGGTTGACGTCGA 57679 Query 148732 TGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCG 148790 | ||||||| |||| ||||| || || |||| ||| | | | ||| | || ||| Sbjct 57678 TAATCTTGTTCAAG-TTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGAAGTCG 57620 Query 148791 TAC---------TTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCAC 148841 || |||| || || | | | | || || | || || |||||||| Sbjct 57619 TAGCAGCCCTCGTTGTAGTCAACAAAGGAAGG---CAGAGCCAATGATGCGAGATTGCAA 57563 Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG---CTGCAT 148898 || || |||||| || || | |||||| | |||||| | ||| || ||| |||| Sbjct 57562 ACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGA 57503 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 || | ||||| |||||| || ||||| || | |||||| ||||||||| |||||| Sbjct 57502 ATGGT---GCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCATG 57446 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGC 149016 | || ||| ||||| ||| | |||| ||| | | | ||| | ||| || Sbjct 57445 AAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCA--CAGCTTCTGGGC-- 57390 Query 149017 GCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGA 149070 ||| || || | |||||| | ||||||| || |||||| ||||| Sbjct 57389 ---CTTCATGGTCTT-GCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTCTCGA 57334 Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130 || | || ||||||||||| | || |||||||||| | ||||||||||| | ||| Sbjct 57333 ACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGT 57274 Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190 |||||| | | || |||||||| ||||||||||| | ||| || || | | | || Sbjct 57273 CGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGT 57214 Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 | || || | ||||| ||| ||| |||||| | | | || | || Sbjct 57213 CACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGT 57154 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGT 149307 | |||||||| ||||||| ||| | |||| || || |||||| |||||||||| Sbjct 57153 CGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGT 57094 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC---TGGCAG 149364 |||||| || | ||||||| || || || | |||||| |||| ||| ||| | Sbjct 57093 CGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGG---AATGACACCATTGGAGG 57037 Query 149365 TGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGA 149424 ||||||| ||| | |||| | |||| || || | | ||||||||||| |||| Sbjct 57036 TGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGACCGA 56977 Query 149425 TGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTC 149482 |||| || ||| | ||| ||||| || | |||| ||| || |||||| || || Sbjct 56976 TGCCTCCTGCCAT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTGTCGTAGATACCGTC 56919 Query 149483 GATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCC 149542 ||||||||| ||||||| | ||| ||||| || ||| || || | | || || Sbjct 56918 GATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACC 56859 Query 149543 GGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACG 149601 || ||||| ||| || ||||| || || | || |||| ||| | | ||| | Sbjct 56858 CGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGG-ACATGAGGTTGTAGG 56800 Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATAT 149661 ||| || || || || ||||| || || |||||| | ||||| ||||| | ||| | Sbjct 56799 TCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGT 56740 Query 149662 GCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCT 149721 |||| |||||||| | | ||| | || || || | |||| ||||| |||| Sbjct 56739 GCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCT 56680 Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || |||| ||||| | ||||| || || ||| | | | | ||||| | ||| Sbjct 56679 TGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTC 56628 >seq1 Length=5508434 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | || ||| ||| | ||||| |||||||| | Sbjct 3986553 GGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCA-TCCTCCAGCTGCTTAC 3986611 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || ||||||||||| || |||||||| |||||||| ||||| || Sbjct 3986612 CAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACT 3986671 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | || || |||| || | || |||||||| || | Sbjct 3986672 TGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGG 3986731 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 3986732 TCTTGACGAAAATCTGCAT 3986750 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || || | | | ||||| |||||||| || Sbjct 3986782 GTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCA-TCCTCAAGCTGCTTTCC 3986840 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 3986841 GGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTT 3986900 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||||| | |||||| || | ||||| || || ||||||| || Sbjct 3986901 GACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 3986960 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 3986961 CTTGACAAAGATTTGCAT 3986978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 3987293 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3987352 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || ||||||||||| |||||||| |||||| ||| Sbjct 3987353 AGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT 3987412 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||| | || ||| || || | |||| ||| || || |||| Sbjct 3987413 AACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 3987468 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || ||||| |||||||| ||||| || |||||| Sbjct 3987052 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTG 3987111 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || || | | ||| || |||| ||||| | Sbjct 3987112 TCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATG 3987171 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGA 133650 || ||||| || || || || |||| Sbjct 3987172 GTCTTGCCAGTGAGGGTCTTGACGA 3987196 >seq101 Length=835023 Score = 111 bits (122), Expect = 2e-19 Identities = 343/519 (66%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || || || ||||| || ||||| || ||||| | | || ||||| | Sbjct 111924 CTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 111865 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTA-AAGTATTTCGGCTGGCCCAACTGT-ACGAGC 120468 ||| || ||||| |||||| | || || | || | || |||| || || || Sbjct 111864 CATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTG--CCAAGTGCCACAAGA 111807 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || ||||| || |||||||| ||||| | |||| | || |||||||||||| | Sbjct 111806 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 111747 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || |||| ||| || | ||||||| ||| |||| || || || ||| || Sbjct 111746 GCGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATC 111687 Query 120589 GCGAGCATAGTGTGGCCG--GGCATCTTGTGTTCGA-TGCGCGTTCGGTAGTACAGGCAC 120645 | | || | || | ||| || | ||| | || | || |||| | | || Sbjct 111686 TCACGAATGATCTGCTTGCTGGC-TCGGTTCTTCAAGTGAGAGT---GTAGGAGA--CAG 111633 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| |||||||||||||| || || || || ||||||||| || |||| ||| Sbjct 111632 GCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCA 111573 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGG-CGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||||| || | |||||| |||| |||| || ||||| || ||||| | Sbjct 111572 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGC-ACCACTGAAGAAAAT 111514 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824 ||||| ||| || || || |||| |||| ||| || | | ||||| | ||| Sbjct 111513 ACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTGGAT 111454 Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||| || ||||| |||||||| || || | ||| || Sbjct 111453 CCACCGAATAGCCCAATCGGCCTTCTTTCGGATGCAAGG 111415 >seq2 Length=1180426 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || || | | | || || ||||||||||| ||| Sbjct 395767 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCA-TCTTCAAGCTGCTTGCCGGCGA 395709 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || || || || |||||||| |||||| ||||| | Sbjct 395708 AGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGT 395649 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | |||||| || | ||||| || || || || || || || | Sbjct 395648 TGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 395589 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 395588 CGAAGATCTGCAT 395576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419657918360