Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 114 3e-20 seq1 114 3e-20 >seq2 Length=1180426 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| | || ||||| ||| ||| Sbjct 395579 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 395638 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| |||||| || Sbjct 395639 ACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 395698 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | |||||||| | || || ||| |||||| || Sbjct 395699 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAACATC 395758 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| ||||||||||| || Sbjct 395759 CAGAAGGAGAGCACTCTTCACCTGGT 395784 >seq1 Length=5508434 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||| | || ||||| || ||| Sbjct 3986975 CAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCCGAC 3986916 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 3986915 ACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAG 3986856 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| |||||||||||||||||| | || ||||| | || ||| |||| |||||| || Sbjct 3986855 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAACATC 3986796 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||||||||||||||| | ||||||| Sbjct 3986795 CAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCG 3986758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||| ||| | || || ||| |||||| Sbjct 3986747 CAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCTGAT 3986688 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || || || || || ||| || Sbjct 3986687 ACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3986628 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||| || || || |||||| |||| ||||| | || || ||||||||| | Sbjct 3986627 CGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAACATT 3986568 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || |||||||| ||| Sbjct 3986567 CAGAAGGAGTCGACCCTTCACCTGGTT 3986541 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||||||||||||||| ||||| ||||||| || ||||| | ||| || Sbjct 3986758 CGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 3986817 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || |||||||||||||||||||| || || || || Sbjct 3986818 CGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTG 3986861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817938147069