Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 3e-20
seq1 114 3e-20
>seq2
Length=1180426
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || |||||||| | || ||||| ||| |||
Sbjct 395579 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 395638
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || |||||| |||||| ||
Sbjct 395639 ACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 395698
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|||||||||||||||| |||||| | |||||||| | || || ||| |||||| ||
Sbjct 395699 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAACATC 395758
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||| ||||||||||| ||
Sbjct 395759 CAGAAGGAGAGCACTCTTCACCTGGT 395784
>seq1
Length=5508434
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| || ||| ||| || | || || || || ||||| | || ||||| || |||
Sbjct 3986975 CAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCCGAC 3986916
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || || || ||| ||
Sbjct 3986915 ACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAG 3986856
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|||| |||||||||||||||||| | || ||||| | || ||| |||| |||||| ||
Sbjct 3986855 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAACATC 3986796
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| ||||| ||||||||||||||| | |||||||
Sbjct 3986795 CAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCG 3986758
Score = 98.7 bits (108), Expect = 2e-15
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || ||||| ||| | || || ||| ||||||
Sbjct 3986747 CAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCTGAT 3986688
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||||||||| || || || || || ||| ||
Sbjct 3986687 ACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3986628
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||||| || || || |||||| |||| ||||| | || || ||||||||| |
Sbjct 3986627 CGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAACATT 3986568
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| ||||| || |||||||| |||
Sbjct 3986567 CAGAAGGAGTCGACCCTTCACCTGGTT 3986541
Score = 98.7 bits (108), Expect = 2e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||| | ||||||||||||||| ||||| ||||||| || ||||| | ||| ||
Sbjct 3986758 CGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 3986817
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| ||||| || |||||||||||||||||||| || || || ||
Sbjct 3986818 CGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTG 3986861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181817938147069
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |