Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq134 107 2e-18 seq2 96.9 4e-15 >seq1 Length=5508434 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||| || | Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| || || |||||||| | |||||||| || || || Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| ||| | || || || ||||| || Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || || ||||| | || || |||||||| ||||| Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || ||||| || || || ||||| || |||||||||||| | ||| | Sbjct 3986761 AGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGG 3986820 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | |||||||| || || || || || || Sbjct 3986821 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCC 3986880 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | |||||||| || ||||| || || || Sbjct 3986881 TTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTG 3986940 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || || || |||||||| Sbjct 3986941 ATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || ||||| ||||| || |||||||||||| Sbjct 3987264 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3987323 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || || | ||||||||||| || || Sbjct 3987324 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 3987383 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||| || || || || Sbjct 3987384 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 3987443 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || || || Sbjct 3987444 TCAAGAGTGATGGTCTTTCCCGT 3987466 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || ||||||||||| |||||||||||| | ||| | || || Sbjct 3986998 ACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 3987057 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| ||||| || ||||| || || || || || || || Sbjct 3987058 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGG 3987117 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || || || || || || ||||| || ||||| || Sbjct 3987118 ATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 3987177 Query 134685 CCGGTTAAAGTTTTAACGA 134703 || || | || || |||| Sbjct 3987178 CCAGTGAGGGTCTTGACGA 3987196 >seq134 Length=152861 Score = 107 bits (118), Expect = 2e-18 Identities = 542/857 (63%), Gaps = 15/857 (2%) Strand=Plus/Plus Query 7555 GAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGAC 7614 || ||| ||| |||||| | |||| || || || ||||| || || ||||| || Sbjct 56727 GAGCGACCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAG 56786 Query 7615 GCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACC 7674 | | |||| || ||| | | ||||| || | ||| || |||||||| || ||| Sbjct 56787 CGTGTCCTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTCACTCACGCTTCACCAACC 56846 Query 7675 ATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGC 7734 |||| ||||| || |||||| |||| || || || || | |||| Sbjct 56847 CTGTTCAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAG 56906 Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATA 7793 ||||||||||||||||| || ||| |||| || | || ||| |||| || ||| || | Sbjct 56907 GAAGACAGCATCGACGGTATCTACGACACCCT-CAAGACTTGTGCCATGATCTCC-AAGA 56964 Query 7794 CGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGT 7852 ||| || || || ||||| ||||| || | || |||| ||| ||| | Sbjct 56965 TGGCAGGAGGCATCGGTCTCAACGTGCACCGAATCCGTGCCACCGGCTCTTACATTGCCG 57024 Query 7853 CCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGC 7912 |||||||| | ||| ||| | || ||| | || || ||||| ||| | | | Sbjct 57025 GTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTC 57084 Query 7913 GACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGT 7969 || | || |||||||| || ||||| || || ||||| || | ||||| | Sbjct 57085 GATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCT 57144 Query 7970 GGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA 8029 ||||||| ||| ||| | | | | ||||||| ||| || ||||| | Sbjct 57145 GGCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCC 57204 Query 8030 AAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATT 8089 || || || | ||||| | ||||| | ||||||||||| |||| ||| || | Sbjct 57205 GCGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGA 57264 Query 8090 TCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACG 8149 ||| | ||| | |||||||||||| || ||||| | | |||| Sbjct 57265 AGAACGGCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACG 57324 Query 8150 GTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG 8209 || | || || | ||||| | | || || || ||| | | | ||||| Sbjct 57325 GTGATGAGTTCGAGAAGCTGTACGAGAAGTATGAGCA----GGCTGGCAAAGGTCGCAAG 57380 Query 8210 ----TGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATG 8265 |||| || | | ||| ||||| | || ||| | ||||||||| | Sbjct 57381 ACCATGAAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAAC 57440 Query 8266 CCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACC 8325 || | |||||| ||||| ||| |||||| |||||||| || | ||| |||||||| Sbjct 57441 CCTTTCATGCTCTACAAGGACAGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACC 57500 Query 8326 ATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCC 8385 ||| | | ||| || ||| |||| || | ||||| | || ||||| || || || Sbjct 57501 ATTCGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGTGCTCCCGATGAGGTCGCT 57560 Query 8386 GTTTGCAATCTAGCGTC 8402 ||||||||||| || || Sbjct 57561 GTTTGCAATCTCGCATC 57577 >seq2 Length=1180426 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||| ||||| || ||||||||||||| Sbjct 395802 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 395743 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || || | |||||||| || || || Sbjct 395742 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 395683 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 395682 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 395623 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || || || | || || ||||| || ||||| ||| Sbjct 395622 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 395572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397205996280