Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq102 187 8e-42 seq1 156 1e-32 seq2 105 2e-17 >seq102 Length=2690835 Score = 187 bits (206), Expect = 8e-42 Identities = 526/803 (66%), Gaps = 6/803 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || ||||| ||||| | ||| ||| || | ||||| || || | Sbjct 1201104 CCCGAGGAGATCTCATCCATGGTCCTCACTAAGATGCGTGAGACCGCTGAGGCCTACCTC 1201045 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||||| || || | | ||||| | ||||| || ||||| || || ||| |||||| Sbjct 1201044 GGTGAGACCGTTAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATAGCCAGCGC 1200985 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || | || || || |||| || || || Sbjct 1200984 CAGGCTACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGAATCATCAACGAG 1200925 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || ||||| || || || || || | || ||| ||| || | Sbjct 1200924 CCCACTGCTGCCGCCATTGCCTACGGTCTCGACAAGAAGATTGAGGGTGAACGCAACGTC 1200865 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | ||||||||||| || ||||| || || || || | || ||||| Sbjct 1200864 CTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTTTCTCTCCTCACCATCGAGGAGGGT 1200805 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || ||||||||||||| || || || ||||| || || || || || Sbjct 1200804 ATCTTCGAGGTCAAGTCAACTGCTGGTGACACTCACCTGGGTGGCGAGGACTTCGACAAC 1200745 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 ||||||||| || |||||||| ||||| || | |||| ||||| | ||| ||| Sbjct 1200744 CGTCTCGTTAACCACTTTGTTAATGAATTCAAAAG-AAAGCATAAAA--AAGATTTGAGC 1200688 Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | ||| | | || | || || || | ||||| || || ||||| ||||| | | Sbjct 1200687 TCCAATGTTCGCGCGCTTCGACGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACTCTT 1200628 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || || | | || |||||||| || || || ||||| || || | || |||| Sbjct 1200627 TCCTCCTCCGCGCAGACCTCTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTAC 1200568 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128 | || || || || ||||| || || || | || |||||| || || | || || Sbjct 1200567 ACCTCCATCACCCGAGCTCGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACTATC 1200508 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 | || || || || | || || ||||| || | | | | || | Sbjct 1200507 CAGCCCGTCGACCGTGTCCTCGCCGACGCGAAAATCGATAAGAGCCTCGTCCACGAGATC 1200448 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | || ||||| || || ||||| || || || || | | | || | || Sbjct 1200447 GTCCTCGTCGGTGGCTCCACCCGTATCCCCCGTGTCCAGAAGCTCATTACCGACTACTTC 1200388 Query 350249 AATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCT 350308 || ||||| || || | || || || || ||||| |||||||| || ||||| || Sbjct 1200387 AACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCC 1200328 Query 350309 GTTCAGGCATCTATTTTATCTGG 350331 |||||||| | ||| | ||||| Sbjct 1200327 GTTCAGGCCGCCATTCTGTCTGG 1200305 >seq1 Length=5508434 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || |||||||| |||||||| ||||| || || || || || || Sbjct 3986748 CATACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTC 3986807 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 3986808 GGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGG 3986867 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || |||| || |||| || Sbjct 3986868 GGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTC 3986927 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| | || || ||||| || ||||| Sbjct 3986928 CACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978 Score = 134 bits (148), Expect = 4e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | ||||| || ||||| || ||||| || ||||| || || Sbjct 3986517 TTACTGACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTA 3986576 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| | || || ||||| || || || || |||||||| || || || ||||| || Sbjct 3986577 ATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTC 3986636 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 || || || || || || || ||||| || | || ||||| || || | |||||| | Sbjct 3986637 TGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGA 3986696 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || |||| ||||| ||||| || || || || ||||||||||| Sbjct 3986697 TTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 109 bits (120), Expect = 2e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || || ||||| ||||| || ||||| || || | Sbjct 3986972 TTTGCATACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 3987031 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 3987032 AGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 3987091 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | ||| || | Sbjct 3987092 CGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAG 3987151 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || || | ||||| || || || || || || Sbjct 3987152 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3987194 >seq2 Length=1180426 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || |||||||| ||| || || || || || || Sbjct 395803 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 395744 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||||||||| || || || || ||||| || || ||||| || || || Sbjct 395743 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 395684 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||| || || ||||| || || | || || || || || | || || | || || Sbjct 395683 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 395624 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 395623 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250730716767