Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq134 399 2e-106 seq101 118 1e-21 >seq134 Length=152861 Score = 399 bits (442), Expect = 2e-106 Identities = 1146/1741 (66%), Gaps = 61/1741 (4%) Strand=Plus/Minus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||| ||||||||||| |||||| || | |||||| || | | |||| Sbjct 58450 TAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTGGTGATCTTG 58391 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 ||| | |||| | |||| ||||||||| ||||| ||||| |||||| | ||||| Sbjct 58390 CCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATGAAGGCACCA 58331 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 || ||||| | ||| | || |||| ||| | ||||||||| | ||| ||| | Sbjct 58330 CGATCGGCGGACATTTGGAGGACCTGGCGTTGGGAAATCTCCCACACCGTCTTGTAGAGC 58271 Query 78379 GCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGG-CTCGCACA--A 78433 | ||| | || ||| | |||| || | | || | | | |||| ||| | | | Sbjct 58270 GACTTAATGTCGTCCGGAATGTT-AGGGAT-GTTCTGGATAGAACCGTTCTCAGAAATGA 58213 Query 78434 TTTCATTCTTAATTTGAGGGTTCC-------AGCGATTGATCTTCTGAAGATCCCGGACC 78486 | ||||| || || ||| ||| | |||| | || ||| | Sbjct 58212 TGCGGTTCTTCAT----GGCATCCGACCACAAGCCCAT-ATCTACC--AGGTCCTT---C 58163 Query 78487 AGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTG 78543 | | ||| |||||| | |||||| || || ||| |||||| |||||||||| Sbjct 58162 AAGAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTC 58103 Query 78544 GTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGC 78603 | || || |||||||| ||||| || |||| |||||| | || ||| || ||| Sbjct 58102 GAGGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGC 58043 Query 78604 ATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG--- 78660 || || |||| || | || |||| ||| ||| ||| | || | ||| Sbjct 58042 ATAGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCGAAGGGTC 57983 Query 78661 ---CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG 78717 | |||||||| || | | | |||||| || || ||||||||||| Sbjct 57982 TCCCAGTCCCAAAGGTCGGAGGGCTTCACGTTCCACATATCAAACTGGAGGATACCCTCA 57923 Query 78718 GACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT-GA 78776 || || || || |||||||| | ||||| ||||||||||| ||||||| ||| || Sbjct 57922 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTT-GCACCGA 57864 Query 78777 CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT 78836 | || || |||||||| | | ||| ||||| |||||| | ||| || |||| Sbjct 57863 GGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTC 57804 Query 78837 GGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGAT 78896 || ||||| | | || || || |||| |||| || || |||||||| |||| Sbjct 57803 GGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAC 57744 Query 78897 AGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCG 78956 | | || |||||||| ||||||||||| || |||||| | | | ||||| ||| Sbjct 57743 ACCAATGGGTCGGTGACGCATGTTGCTGTTGCGGGCCTCGATGATGGGGTAGTGGTTGAC 57684 Query 78957 ATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAA 79016 ||||| | ||||| ||| || ||| ||| | || ||||||| | || ||| Sbjct 57683 GTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGAA 57624 Query 79017 ATCAAAAT-GATTTCCTTTGA-TGAAAGTCGGTAGGCACAGC----GATGCCAGGTTGCA 79070 || | | || || | | || || ||||| ||| ||||| || ||||| Sbjct 57623 GTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGATGCGAGATTGCA 57564 Query 79071 CACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTT 79130 || || ||| || || | | ||||||||| || ||||| | || || ||| Sbjct 57563 AACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAAAGGTTGGA--ACTG 57506 Query 79131 G--ATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATG 79188 |||||||| | ||||||||||||||| || ||| ||| |||||||||| |||| Sbjct 57505 CGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCATG 57446 Query 79189 TACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGG 79248 | || | ||||| || |||| || | | | | | ||| | | | ||||| Sbjct 57445 AAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTGGGCCTTC 57386 Query 79249 ACAACCTTCTTGTACCGACCCTGTGCGA-------CGTACGTCCGGTACAACTCGTTGAA 79301 | ||||| ||||| | ||| | | ||| || ||||| || | ||| Sbjct 57385 ATGG---TCTTG---CGACCTT-TGCCAGCCTGCTCATACTTCTCGTACAGCTTCTCGAA 57333 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 | || || ||| ||| | || || |||||||| | |||||||| || |||||| Sbjct 57332 CTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTC 57273 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 ||| |||||| || || |||||| || || ||||||||||||||| ||| | ||| Sbjct 57272 GCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTC 57213 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 || || || || | ||| |||||| ||||| || | || || | | ||| Sbjct 57212 ACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTC 57153 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 ||||||||| ||||| || || |||||||| | ||| |||||| ||||||||||| Sbjct 57152 GGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTC 57093 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 |||||| || || ||||||||||| || |||||||| || | || || | || | ||| Sbjct 57092 GACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCC 57033 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGC 79660 ||| || ||| || | ||| | || || || | | ||| || || ||||||| Sbjct 57032 GTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGCACGTTGAGACCGATGC 56974 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | | ||||||||| || || |||||| || |||||||| || ||||| Sbjct 56973 CTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGC 56914 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 ||| |||||||| | |||||||||||| |||| ||| || | ||||| || | Sbjct 56913 TGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCAT 56854 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCT 79840 |||| ||||| || | ||||| ||||| | ||| | ||| || | ||| |||||| Sbjct 56853 TGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCA 56794 Query 79841 TGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGG 79900 ||| ||| || |||||| || ||||||||| ||||| ||||||| | || ||| | Sbjct 56793 GGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGAG 56734 Query 79901 G 79901 | Sbjct 56733 G 56733 Score = 336 bits (372), Expect = 2e-87 Identities = 939/1420 (66%), Gaps = 38/1420 (3%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| ||||| ||||||||| || |||||| || ||| ||| Sbjct 56733 CCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAGCGTGTC 56792 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | ||||| ||| |||| ||| |||| ||| | ||||| ||||| | || ||||| || Sbjct 56793 CTGGAGACCTACAACCTCATGT-CCAGCAAGCTGTTCACTCACGCTTCACCAACCCTGTT 56851 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 ||| || ||||| | || ||| |||| ||| ||||| || | |||||||| || Sbjct 56852 CAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAAGA 56911 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||| || || |||||||| || |||||| || || ||||||||| | | || Sbjct 56912 CAGCATCGACGGTATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAGATGGCAGG 56971 Query 19342 GGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 || ||||| || || ||| | | ||||| | | || | || || || | Sbjct 56972 AGGCATCGGTCTCAACGTGCACCGA-ATCCGTGCCACCGGCTCTTACATTGCCGGTACCA 57030 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 |||| || | ||| || | || |||||||| |||||||||||||| || | |||| Sbjct 57031 ACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTCGATACG 57090 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| || || | |||||||| ||||| ||||| ||||||| Sbjct 57091 TCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTGGCACG 57150 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||||| | || ||| | || |||||| |||||| || | || || ||| || Sbjct 57151 CCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCGCGCTC 57210 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | ||| | ||| |||| ||||||| || || || |||||| || || |||||| ||| Sbjct 57211 GTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAAGAACG 57270 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || ||| || |||||||| | || ||||| || || | || |||||| || | Sbjct 57271 GCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGGTGATG 57330 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAG---GGC--CGGT-TCAAGAAGGTGG 19754 |||| | || ||||| || || | || ||| ||| ||| ||||| || Sbjct 57331 AGTTCGAGAAGCTGTACGAGAAGTATG-AG--CAGGCTGGCAAAGGTCGCAAGACCATG- 57386 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 ||||| | | | ||| | | || | | ||| ||| ||||||| || | Sbjct 57387 --AAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAACCCTT 57444 Query 19815 ACATGTGCTACAAGGAC-GCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT- 19872 |||| |||||||||| || || | || || | || ||||||||| | ||| | || Sbjct 57445 TCATGCTCTACAAGGACAGCTGCAACCGTAAAAGC-AACCAGAAGAACCTGGGCACCATT 57503 Query 19873 -CAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCG 19931 ||| |||||||| || ||||| ||||| ||| | || || ||| || | Sbjct 57504 CGCAGT--TCCAACCTTTGCACTGAGATCATCGAGTACTGTGCTCCCGATGAGGTCGCTG 57561 Query 19932 TGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCG 19985 | || ||||| || || || ||||| | || || ||| | || || || Sbjct 57562 TTTGCAATCTCGCATCATTGGCTCTGCCTTCCTTTGTTGACTACAACGAGGGCTGCTACG 57621 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| || | ||||||| || | ||| ||| || || |||| | |||| Sbjct 57622 ACTTCCAGAAGCTACACGAGGTCACACAGGTTGTCGTCCGCAACTTGAACAAGATTATCG 57681 Query 20046 ATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCG 20105 | ||| ||||| | | | ||| ||||| || ||||| ||||| || || | Sbjct 57682 ACGTCAACCACTACCCCATCATCGAGGCCCGCAACAGCAACATGCGTCACCGACCCATTG 57741 Query 20106 CGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC 20165 |||| |||||||| || || || | ||| || || || | | ||||| | Sbjct 57742 GTGTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTTCGCATGCCCTTCGAGTCCC 57801 Query 20166 CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGG 20225 || |||| || ||| | |||||| ||||| ||| || | |||||||| || | || Sbjct 57802 CCGAGGCTCGTGAGTTGAACAAGCAGATCTTTGAGACCATTTACCACGCTGCTTTGACGG 57861 Query 20226 AATC-GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 || |||| ||||||| || ||||| || || ||| | |||||||| || || || Sbjct 57862 CCTCGGTGC-AACTCGCTAAGGAGGAGGGTCCTTACTCTAGCTTCAAGGGTTCCCCAGCA 57920 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGT----CACTGAGA---ATGAGTTTTG 20337 || ||||||||||||||| || |||||| ||| | || || || | | | Sbjct 57921 TCTGAGGGTATCCTCCAGTTTGATATGTGGAACGTGAAGCCCTCCGACCTTTGGGACTGG 57980 Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 ||| |||| | || | ||| ||||| |||||||| ||||| |||| || Sbjct 57981 GAG-ACCCTTCGCGAGCAGGTTAAGGAGCACGGTATTCGCAACAGCTTGCTTCTCGCCCC 58039 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 ||||| || ||| || | |||||| |||| || ||||| |||||||| || || Sbjct 58040 TATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAATAACGAATGCTTCGAGCCTTATAC 58099 Query 20458 GACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 | ||||||||| ||| ||| || || ||||||||| Sbjct 58100 CTCGAACATCTACCAGCGCCGTGTCCTTGCTGGTGAGTTC 58139 >seq101 Length=835023 Score = 118 bits (130), Expect = 1e-21 Identities = 312/462 (68%), Gaps = 22/462 (5%) Strand=Plus/Plus Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 |||| ||||| || ||||| | ||||| || ||| || || || |||||| ||| Sbjct 111470 CATCTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTG 111529 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCA 60087 | ||| | || ||||||||||| |||||||| |||||||| ||| ||| ||||||| Sbjct 111530 CTTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCA 111589 Query 60088 ACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCAC 60147 ||||||| ||||| || || |||||||| || || || || || | | ||| ||| Sbjct 111590 ACGAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGC-CTGTCTC-CTA--CAC 111645 Query 60148 AC-CTATTGGAAAAATGCCCTTCCAAG--GAT-ATTCACAAGATTGTTCAGTGGGCTTGT 60203 | | ||| | || | | |||| ||| |||| ||| | ||| | ||| Sbjct 111646 TCTCACTTGAAGAACCGAGCCAGCAAGCAGATCATTCGTGAGA-TCATCACCGACGCTGT 111704 Query 60204 GAA-GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGC 60262 || | ||| |||||| | || || || || || ||| || | || ||| || | Sbjct 111705 CAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTC 111764 Query 60263 TGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG-CCTCATGGCCCAGTTTG--- 60318 | |||| ||| ||||| ||||||| || ||||| | || || || || | Sbjct 111765 GGACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAA 111824 Query 60319 -GAGAAGGACCAATTTAC-GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTT 60376 |||||| |||||| | || ||||| ||||||| ||||||| |||||| | Sbjct 111825 CGAGAAG-----ATTTACAAGTCTG-CCAACCCCTTCGACTTCATGGAGAACATCTCCCT 111878 Query 60377 GGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | || |||||||||||||| |||||||| || || ||||| Sbjct 111879 TGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 111920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523504110160