Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq134 295 7e-75
seq116 147 2e-30
seq101 96.9 4e-15
>seq134
Length=152861
Score = 295 bits (326), Expect = 7e-75
Identities = 430/604 (71%), Gaps = 4/604 (1%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| ||||| | || ||| ||||||||| | |||||||
Sbjct 56733 CCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAGCGTGTC 56792
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
| ||||| ||| || | ||| | ||| || || ||||| | ||||||||||||
Sbjct 56793 CTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTCACTCACGCTTCACCAACCCTGTTC 56852
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
|| || ||||| ||| |||||| |||| |||||||||||| | |||||||| |||
Sbjct 56853 AATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAAGAC 56912
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|||||||| |||||||| || |||||| |||||| ||||||||| | | ||
Sbjct 56913 AGCATCGACGGTATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAGATGGCAGGA 56972
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
|| |||||| || || ||| | ||| ||||||| | |||| | || || || |
Sbjct 56973 GGCATCGGTCTCAACGTGCACCGAA--TCCGTGCCACCGGCTCTTACATTGCCGGTACCA 57030
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
||||| | || |||| || | ||||||||||| |||||||||||||| || || ||||
Sbjct 57031 ACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTCGATACG 57090
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
|| ||||||| || ||||| || | |||||||| ||||| ||||| |||||||
Sbjct 57091 TCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTGGCACG 57150
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
||||| || | || || | || ||||| ||| || || | ||||| ||| |
Sbjct 57151 CCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCGCGCTC 57210
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717
||||| |||| || |||||||| || || || |||||| | || |||||| |||
Sbjct 57211 GTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAAGAACG 57270
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777
|| ||| || |||||||| || ||||||||||| || | | ||||||||| |
Sbjct 57271 GCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGGTGATG 57330
Query 53778 AGTT 53781
||||
Sbjct 57331 AGTT 57334
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
|| ||||||||||| | |||||| ||||| ||||| || |||||| |||| | | ||
Sbjct 58323 GCCGATCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTCAACATCCACATGAAAGACCCC 58382
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
|| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 58383 ACAATGGGCAAGATCACCAGCATGCACTTCGCAGGCTGGAAGCTCGGTCTCAAGACCGGC 58442
Query 55907 ATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 58443 ATGTACTACCTCCGCACC 58460
>seq116
Length=406147
Score = 147 bits (162), Expect = 2e-30
Identities = 221/312 (71%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||| | |||||||| ||| ||||||||| || |||||||| ||| || ||||| |
Sbjct 140006 ACGGGGAAAGGCGAGTAAAAGTGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTC 140065
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
| | ||||| | ||| || ||||| | ||| | |||||| | ||| || ||||| |
Sbjct 140066 GAGAGCCGAAGTTTCCGCTTGGCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCT 140125
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| |||||| | || || || || || ||||||||||| || | ||| || |
Sbjct 140126 GGGCCAAGCCAATGATGGTTTGCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTT 140185
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528
| | || || || || || | | |||||||| | || ||||| | ||| ||||||
Sbjct 140186 CGGAAACATAACCAGCTAGTTCAACCACCTTCTTATCCTTGACG--ATGTTTCTCTTGAA 140243
Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588
||||||||| || ||||||||||||| ||||||| ||||| ||| ||| || ||
Sbjct 140244 GCAGGCATACATGACCTTGCGCTGACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGA 140303
Query 117589 ACGCTTGATGTC 117600
|||| || ||||
Sbjct 140304 ACGCATGTTGTC 140315
Score = 93.3 bits (102), Expect = 5e-14
Identities = 194/289 (67%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 152036 TGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGG 152095
|||| || | || || ||||| ||| || || || || | || || | ||| |
Sbjct 140027 TGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTCGAGAGCCGAAGTTTCCGCTTG 140086
Query 152096 GCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGC 152155
||||||| ||||| |||||| | ||| ||||| ||||| ||||| | || ||
Sbjct 140087 GCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCTGGGCCAAGCCAATGATGGTTT 140146
Query 152156 CCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACT 152215
||| ||| |||||||| ||||| || | ||| || || | | || || || | |
Sbjct 140147 GCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTTCGGAAACATAACCAGCTAGTT 140206
Query 152216 GCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCT 152275
|||||||| | ||| | | ||| |||||| ||||| || || ||||||||||
Sbjct 140207 CAACCACCTTCTTATCCTTGACGATGTTTCTCTTGAAGCAGGCATACATGACCTTGCGCT 140266
Query 152276 GGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
| || ||||| || || | ||| |||||| |||||| || ||||
Sbjct 140267 GACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGAACGCATGTTGTC 140315
>seq101
Length=835023
Score = 96.9 bits (106), Expect = 4e-15
Identities = 283/426 (66%), Gaps = 20/426 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|||||||| || ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 111920 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 111861
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCC---ATG 74576
||||||| ||||| | |||||| |||||| |||| ||||| |
Sbjct 111860 AAGTCGAAGGGGTTGGCAGACTTGTAAAT---CTTCTCGTTGCCAA---GTGCCACAAGA 111807
Query 74577 AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
|| || || || ||||| | ||||| ||| |||| ||| | |||||| | ||
Sbjct 111806 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 111747
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696
||| |||||||||||||| | ||||| ||| | | | ||| || |||
Sbjct 111746 GCGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATC 111687
Query 74697 TTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGT-AAAGCGTCACGGC 74752
| ||||| ||| ||| ||| | || | ||| |||||||| | | | || |||
Sbjct 111686 TCACGAATGATCTGCTTG--CTGGCTCGGTT-CTTCAAGTGAGAGTGTAGGAGACA-GGC 111631
Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812
|| || ||| ||| ||||| | || | || || || || | | ||||||
Sbjct 111630 GAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGG 111571
Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872
||| || ||||||||||| | ||| ||||||| ||| | |||||||||||| || ||
Sbjct 111570 CATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACC 111511
Query 74873 TTCGAC 74878
|| ||
Sbjct 111510 CTCAAC 111505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214707202200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |