Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq134 329 4e-85 seq1 176 5e-39 seq2 143 3e-29 seq124 114 1e-20 seq116 111 2e-19 >seq134 Length=152861 Score = 329 bits (364), Expect = 4e-85 Identities = 1130/1741 (65%), Gaps = 43/1741 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| || ||||||||| | |||||| Sbjct 58459 GTGCGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTG 58400 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | |||||||| | |||| |||||| || |||||||||||| |||| Sbjct 58399 GTGATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATG 58340 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCATACTGT 80216 || || |||||||| || | ||||| | | || | || | | ||| ||||| || || Sbjct 58339 AAGGCACCACGATCGGCGGACATTTGGAGGACCTGGCGTTGG-GAAATCTCCCACACCGT 58281 Query 80217 ACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTT 80276 || | | || || || ||||||| | | | | | ||||| || Sbjct 58280 CTTGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTC 58221 Query 80277 TACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333 ||| | || |||| || || ||| | || | | ||| || |||| Sbjct 58220 AGAAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTTCAA 58161 Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393 || ||||| | ||||| || || ||| || ||| | || | ||| | Sbjct 58160 GAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGA 58101 Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 || |||||||| || ||||| || || |||||||| | || || || || ||||| Sbjct 58100 GGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCAT 58041 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGA 80513 ||| ||| | || || || | ||||||| ||| | | |||||| || | Sbjct 58040 AGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCG-AAGGGTCT 57982 Query 80514 CCAAAAATCAAC---CCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568 || | ||| | | ||| | || |||||| || ||| | ||| ||||| Sbjct 57981 CCCAGTCCCAAAGGTCGGAGGGCT-TCACGTTCCACATATCAAACTGGAGGATACCCTCA 57923 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGA 80627 || || || || ||| ||| | ||| || |||||| ||| || || | ||| ||| Sbjct 57922 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCAC-CGA 57864 Query 80628 CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTG 80687 || | | || ||||| |||||| |||||||| |||||||| | || |||| Sbjct 57863 GGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTC 57804 Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 ||| ||||| | || || | || ||| | ||||| || ||||| || |||| Sbjct 57803 GGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAC 57744 Query 80748 GGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806 | || || ||||| ||| |||| | | || |||||| || ||||| ||| Sbjct 57743 ACCAATGGGTCGGTGACGCATGTTGCTGTTGCG-GGCCTCGATGATGGGGTAGTGGTTGA 57685 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAA 80866 ||||| | ||||| |||||| |||||| |||| || || || || ||||| | Sbjct 57684 CGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGA 57625 Query 80867 AGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGC 80920 ||||| | | | | || ||||| | || || || || || ||||||| Sbjct 57624 AGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGATGCGAGATTGC 57565 Query 80921 ACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAG 80977 | || || ||||| || |||| | ||| ||||| ||| || ||||| | || ||| Sbjct 57564 AAACAGCGACCTCATCGGGAGCA-CAGTA--CTCGATGATCTCAGTGCAAAGGTTGGAAC 57508 Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 ||| || |||||||| |||||||| || |||||| |||||||||| || Sbjct 57507 TGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCA 57448 Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 || | ||| | ||||| ||| ||| | || | |||||| | ||| | || | |||| Sbjct 57447 TGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTGGGCCT 57388 Query 81098 TGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTG 81156 | | |||||| |||||| | | ||||||| |||| |||||| ||||||| Sbjct 57387 TCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTC-TCGAACTCA 57329 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 |||||| |||| || | |||||||| || |||||||| || ||||||| | Sbjct 57328 TCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCG 57269 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | ||||| ||| ||||||||| || |||||||| ||||| ||||| ||| || Sbjct 57268 TTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGA 57209 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| || || || | || ||||| ||||| || | || || | | ||| || Sbjct 57208 GCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCG 57149 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTG 81390 ||||| ||||| || || | ||||| | || | | || ||| ||||||| | Sbjct 57148 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACC---GGGTCGCTTGTTGCCGCCCTGGTCG 57092 Query 81391 ACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCG 81450 ||||| || ||||| ||| || ||||| | |||||| |||| ||||| || ||| Sbjct 57091 ACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCG 57032 Query 81451 TTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGC 81508 || ||||| | || || || |||| || | | ||| |||| ||||||||| Sbjct 57031 TTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGC 56974 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | |||| | ||| || ||| ||||| || | ||| || || || || ||||||| Sbjct 56973 CTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGC 56914 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 | |||| |||||||||| || ||| ||| |||| |||||| | || |||| Sbjct 56913 TGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCAT 56854 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCT 81688 ||||||| ||||| | |||||| |||| | | ||||| |||| ||||| ||| Sbjct 56853 TGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCA 56794 Query 81689 TGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGG 81748 ||| || || |||||||| || |||| ||| |||||||| | ||||| ||| | Sbjct 56793 GGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGAG 56734 Query 81749 G 81749 | Sbjct 56733 G 56733 >seq1 Length=5508434 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| |||||||| || |||||||| |||||| Sbjct 3986978 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3986919 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || |||||||| |||||||| || || ||||||||| Sbjct 3986918 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 3986859 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||||| |||||| | | ||||| || Sbjct 3986858 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 3986799 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || || | || ||||| ||||| Sbjct 3986798 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGG 3986752 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || || ||||| ||||| |||| ||| | Sbjct 3987194 GTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGAC 3987135 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || |||||||||||||| || || || ||||| ||||| || || Sbjct 3987134 AATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATC 3987075 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| | ||||| || ||||||||||| Sbjct 3987074 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 3987015 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || ||| | |||||||||||||| Sbjct 3987014 TCTACCCTTCACCTCGTCCTCCGTCTTCGCGGTGG 3986980 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||||||||| || ||||||| ||| ||||| || || || Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || ||||| || || | ||||| || || || || Sbjct 3986570 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGTCA 3986521 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||||||||||| ||||| || | ||| | || | ||| | Sbjct 3987466 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 3987407 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| || |||||||| || || || ||||| ||| Sbjct 3987406 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 3987347 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| ||||| || || Sbjct 3987346 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 3987287 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || || || Sbjct 3987286 CTCGTCCTCCGCCTCCGTGGAGG 3987264 >seq2 Length=1180426 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 395576 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 395635 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||||||||| || |||||| Sbjct 395636 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 395695 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || ||||| || || |||| || ||||| ||| ||||| || Sbjct 395696 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGC-GACTACAA 395754 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||| || || | || || || ||||| Sbjct 395755 CATCCAGAAGGAGAGCACTCTTCACCTGGTGCTCCGCCTCCGTGGTGG 395802 >seq124 Length=2242402 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | |||| Sbjct 2075866 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 2075807 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || ||||| |||||||||||||| || || |||||||| | Sbjct 2075806 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 2075747 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 2075746 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 2075687 Query 27595 G 27595 | Sbjct 2075686 G 2075686 >seq116 Length=406147 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGC 32060 ||||||||||| || || |||||| |||||| ||| | ||| || || | |||||||| Sbjct 140267 CAGCGCAAGGTCATGTATGCCTGCTTCAAGAGAAACATCGTCAAG-GATAAGAAGGTGGT 140209 Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120 | || | || || || | || |||||| | || ||||| || || || || || || Sbjct 140208 TGAACTAGCTGGTTATGTTTCCGAACAAACGTCATACCACCATGGTGAAGCTTCTCTTCA 140149 Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 | ||||| | | | || |||||||| ||||| |||| ||| | |||| ||||| Sbjct 140148 GCAAACCATCATTGGCTTGGCCCAGAACTTCGTCGGCTCAAACAACATCAACTGTCTCGA 140089 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 |||| ||| | || || | || || ||||| ||| ||||||||||| | ||||| Sbjct 140088 GCCAAGCGGAAACTTCGGCTCTCGACTTGCCGGCGGCTCAGATGCTGCGAGTCCTCGTTA 140029 Query 32241 CATCTTCACCCGTCT 32255 || || || || || Sbjct 140028 CACTTTTACTCGCCT 140014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309052641680