Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq1 165 2e-35
seq124 120 7e-22
>seq2
Length=1180426
Score = 181 bits (200), Expect = 2e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || |||||||||||| ||| || |||||||| || || ||||| | ||||||
Sbjct 395787 AGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCT 395728
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||||||||| || || ||||| || |||| ||| |||||||||
Sbjct 395727 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 395668
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || ||||| || |||||||||
Sbjct 395667 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 395608
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 395607 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 395573
>seq1
Length=5508434
Score = 165 bits (182), Expect = 2e-35
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | ||||| |||||||| || || || ||||||||||| || || | |||||
Sbjct 3986986 CGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTT 3987045
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || ||||||||||| || ||||| ||||| |||||||| || || | ||
Sbjct 3987046 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCC 3987105
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| ||||| || |||||||| || || || ||||||||
Sbjct 3987106 TCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGG 3987165
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || ||||| ||||| ||
Sbjct 3987166 GTGATGGTCTTGCCAGTGAGGGTCTTGAC 3987194
Score = 165 bits (182), Expect = 2e-35
Identities = 157/201 (78%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| ||||| || |||||||| || |||||||| || || | ||
Sbjct 3987266 TCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 3987325
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || || || |||||||| || |||||||||||||| || || || ||||| |
Sbjct 3987326 GGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGAT 3987385
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| || ||||| ||||||||||| ||| || |||||
Sbjct 3987386 GCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTC 3987445
Query 211070 GAGAGTGATCGTCTTTCCCGT 211090
|||||||| |||||||||||
Sbjct 3987446 AAGAGTGATGGTCTTTCCCGT 3987466
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || |||||||| || ||||| || || ||||| ||||| ||||| | |||||
Sbjct 3986539 AGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCC 3986598
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || || ||||| || || ||||| || || | || ||||||||
Sbjct 3986599 TCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 3986658
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||| || ||||| ||| ||||||||||| ||||||
Sbjct 3986659 TGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTC 3986718
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 3986719 TTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| || |||||||||||||| ||||| || |||||||| || || | | |||
Sbjct 3986757 ACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 3986816
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||||| || |||||||| || || || ||||| || || | ||
Sbjct 3986817 ACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACC 3986876
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || || || ||||| ||||| || || ||||| ||
Sbjct 3986877 CTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAG 3986936
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || | ||||| ||||| | |||||
Sbjct 3986937 GGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978
>seq124
Length=2242402
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | ||||| || |||||||| || ||||||||
Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || || || || |||| ||| ||||| ||||||||||| || || || ||
Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || ||||| || ||||| ||||| |||||||| ||||| || ||
Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2075866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159149193040985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |