Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq2 86.0 4e-12 >seq1 Length=5508434 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || ||||| |||||||| || || || | Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || | || ||||| || || | || ||||| || Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGA-TTCAAGACAAGGAGGGCATCCCCCCAGACCA 3986632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || ||||| || | ||||| | | |||||||| Sbjct 3986631 GCAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAA 3986572 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3986571 CATTCAGAAGGAGTCGAC 3986554 >seq2 Length=1180426 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || |||||||| || || || || || Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | || | | || || || ||||| || || | || || || Sbjct 395633 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 395692 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || |||||||| || || ||||| | || || | |||| ||| Sbjct 395693 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 395752 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 395753 AACATCCAGAAGGAG 395767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008821416012