Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq1 154 3e-32 seq124 134 3e-26 seq101 113 9e-20 seq13 96.9 7e-15 seq149 84.2 5e-11 >seq2 Length=1180426 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||||| || || |||||||||||||| Sbjct 395803 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 395744 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || ||||| ||||| | || || ||||| || Sbjct 395743 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 395684 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||||||||| |||| || || Sbjct 395683 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 395624 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 395623 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 395573 >seq1 Length=5508434 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || ||| ||||||||||||||||| | Sbjct 3986979 ACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 3987038 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||||| || |||||||| || Sbjct 3987039 GAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGG 3987098 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || ||||||| ||||| Sbjct 3987099 GATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGAC 3987158 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 3987159 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3987196 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || ||||| || | || || || || |||||||| ||| Sbjct 3986523 ACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACT 3986582 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || ||||| || | || || ||||| || Sbjct 3986583 CAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGG 3986642 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||| | || || | |||||||| || |||| |||||| Sbjct 3986643 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGAC 3986702 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| || || | ||||| ||||| |||||||| Sbjct 3986703 CTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 3987263 ACCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3987322 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||| | || || || || || Sbjct 3987323 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGG 3987382 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 3987383 GATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGAC 3987442 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || |||||||| ||||| ||||||| Sbjct 3987443 CTCAAGAGTGATGGTCTTTCCCGTCA 3987468 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 3986751 ACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 3986810 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| || || || ||||| ||||| | || || ||||| | Sbjct 3986811 CAAG-GTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGG 3986869 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | ||||||||||| || || ||||| | || || | ||||| ||||| || | || | Sbjct 3986870 GGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCA 3986929 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 3986930 CCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 5466641 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 5466583 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 5466582 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 5466524 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 5466523 TGGGCAATCCGCAGCCAAGCCCCTAA 5466498 >seq124 Length=2242402 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || ||||| |||||||| || |||||||| | || || | || Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2075866 >seq101 Length=835023 Score = 113 bits (124), Expect = 9e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | ||| || | |||||| |||| | |||||||| | || |||||| Sbjct 111716 AGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGA 111775 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 |||||| ||||| || || || || ||| || | ||||| || || ||||||| | | Sbjct 111776 AGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTT 111835 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || || |||||||||| || |||||| ||| || || || || || |||| Sbjct 111836 ACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 111895 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||| |||||||| | ||||| || ||||| Sbjct 111896 TCTTCGAGAAGCGTGTTGGTGATTACCAGAAGGC 111929 >seq13 Length=1168504 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | | |||||||||| || || || | Sbjct 898600 ACACCACCCTCGAACTTCTTGAGGGCCTTGGAAAGGGCACCGAGAGAGTCACGATCGAGG 898659 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||||||||||| |||||| | ||||| ||||| |||| | | Sbjct 898660 TAGTTGGTGGGCTCGTCAAGAACGATGAGATGGGGTCGCTGCCA-AGAGCAGGCGGCAAG 898718 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||| | || ||||||||||| ||||| |||||||| |||| Sbjct 898719 GACAGTCTTGACACGCTGGCCACCAGACAGACCACGCATGCGAGAGTGAG 898768 >seq149 Length=35441 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 8785 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 8727 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 8726 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 8668 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 8667 TGGGCAATCCGCAGCCAAGCCCCTAA 8642 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 12925 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 12867 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 12866 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 12808 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 12807 TGGGCAATCCGCAGCCAAGCCCCTAA 12782 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 26255 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 26197 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 26196 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 26138 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 26137 TGGGCAATCCGCAGCCAAGCCCCTAA 26112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736665255606