Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 2e-28
seq124 127 1e-24
seq1 122 6e-23
>seq2
Length=1180426
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||||||||| ||||||||||| ||||||||||| ||| || || | || ||
Sbjct 395785 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 395726
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||| | |||||||| || | || | || ||||| |||
Sbjct 395725 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 395666
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | || ||||||| || |||||||| | || ||||||||
Sbjct 395665 GATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 395606
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| |||||||| |||||
Sbjct 395605 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576
>seq124
Length=2242402
Score = 127 bits (140), Expect = 1e-24
Identities = 139/183 (76%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| | || || |||||||| ||||| ||||
Sbjct 2075686 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 2075745
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| ||||||||||| | || | || ||||| ||| ||||| ||| || |||
Sbjct 2075746 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 2075805
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | || || ||||| |||||||||||||||||
Sbjct 2075806 --CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 2075863
Query 44326 GAA 44328
|||
Sbjct 2075864 GAA 2075866
>seq1
Length=5508434
Score = 122 bits (134), Expect = 6e-23
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| |||||||| || |||||| ||||||||||| |||| | || | || | || ||
Sbjct 3986770 ACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGT-ACGGCCATCCTC 3986828
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||| | |||||||| |||| || | ||| ||||| |||
Sbjct 3986829 AAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTG 3986888
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|||||| ||| || ||| | || ||||||| || |||||||| | || || |||
Sbjct 3986889 AATCTTCGACTTGACATTGT--CGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 3986946
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | |||||| || |||||||||||
Sbjct 3986947 TTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978
Score = 118 bits (130), Expect = 8e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| || |||||| || ||||||||||| || ||| | || |||
Sbjct 3986542 ACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCC 3986601
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||| || | |||||||| |||| || | || ||||| ||
Sbjct 3986602 AGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 3986661
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | || || || | ||||| ||||| | ||||||||||
Sbjct 3986662 ATCTTCGACTTGACATTGT--CGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCT 3986719
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||||||||| ||||| || |||||
Sbjct 3986720 TGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 116 bits (128), Expect = 3e-21
Identities = 139/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| |||||| ||||||||||| |||| ||| ||| |||| ||
Sbjct 3987282 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 3987341
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||||| | ||| | || ||||| |||
Sbjct 3987342 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGG 3987401
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| || ||| | |||||||| | ||| || ||||| | || || |||||
Sbjct 3987402 ATCTTCGACTT-AACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTT 3987460
Query 44308 TCCCGT 44313
||||||
Sbjct 3987461 TCCCGT 3987466
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||||||||||| |||| ||| || | || ||
Sbjct 3986998 ACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 3987057
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| ||||| || || | || | ||| ||||| |||
Sbjct 3987058 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGG 3987117
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | ||||| || | || || ||||| | || || |||||
Sbjct 3987118 ATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 3987177
Query 44309 CCCGTGAGGGTCTTCACGA 44327
|| ||||||||||| ||||
Sbjct 3987178 CCAGTGAGGGTCTTGACGA 3987196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989570784613
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |