Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq85 87.8 1e-12 >seq1 Length=4044527 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| |||||||||||| |||| || | || || Sbjct 542158 ACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCA 542217 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 542218 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 542277 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||||||||| | ||| |||||||| Sbjct 542278 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 542337 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || ||||| ||||| |||||| Sbjct 542338 CCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 542373 >seq85 Length=3693789 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| || ||| | || || || || ||||||||||| | Sbjct 3530915 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 3530974 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| || || || || | |||||||| ||| || || ||| || Sbjct 3530975 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 3531034 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | ||||| ||| ||||| | ||| || ||||||||||| || |||||||| | Sbjct 3531035 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 3531094 Query 45327 A 45327 | Sbjct 3531095 A 3531095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074371823612