Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq97 286 3e-72 seq96 123 2e-23 seq1 104 2e-17 seq151 91.5 1e-13 >seq97 Length=371559 Score = 286 bits (316), Expect = 3e-72 Identities = 641/957 (67%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || |||||||| || || ||||| || | |||||| | || || || || Sbjct 82151 GATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAA 82092 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| || || ||||||| || ||||||||||||| || ||||| ||| Sbjct 82091 AGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCC 82032 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| || ||| ||| | ||| | ||| || ||||| Sbjct 82031 TTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGC 81972 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACG 23264 |||| || | | ||| || |||| ||| | | ||| ||||| | ||||| | Sbjct 81971 TTCTGGGCCTTCATG-GTCTTGCG-ACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCT 81914 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || || || ||||||| || || || || ||||| | | | || ||||||||| Sbjct 81913 TCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAG 81854 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| || || || || || |||| || ||||| || ||||| || || ||| Sbjct 81853 TCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGA 81794 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || || ||||| | || || |||||| |||||| || |||||| || || | Sbjct 81793 ACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAA 81734 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||| ||||||| ||| || || || |||| ||| ||||||| Sbjct 81733 AAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGC 81674 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| || || ||||||||| | || | ||||| || | || ||| |||| Sbjct 81673 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGG 81614 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | |||| || || | || || | || || | ||| |||| || || Sbjct 81613 AGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGAC 81554 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | |||||||| || || || ||||| || || || || ||||||||||| || | Sbjct 81553 CGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGT 81494 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 |||||||||| || || | | |||| ||| || ||||||| || | | || ||| Sbjct 81493 CGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTAC 81434 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTA 23802 | || |||||| || || ||||| || | || | | | ||||| || ||||| Sbjct 81433 CCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGC--TGGACATGAGGTTGTA 81376 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | || ||||| || || || |||| ||||| ||||| ||||| Sbjct 81375 GGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCAT 81316 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || ||||||| ||| || | ||| | || || | || || || || | | || Sbjct 81315 GTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGT 81256 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || || || || | ||||| || ||||| || | || ||||| || | ||| Sbjct 81255 CTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTCCAA 81199 >seq96 Length=3495428 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| || |||| || ||| | || Sbjct 1450246 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 1450305 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| || || |||||||| ||| | || || |||||| Sbjct 1450306 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 1450365 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| || | || |||| ||||| ||| Sbjct 1450366 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 1450425 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||| ||||| ||||| || | || | |||||| Sbjct 1450426 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGT 1450473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || || |||||| | || || || | ||| Sbjct 1450018 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 1450077 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| || | || || |||||| Sbjct 1450078 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 1450137 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || || || || ||| || ||| Sbjct 1450138 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 1450197 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| || || || |||| | || |||| Sbjct 1450198 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGTA 1450246 >seq1 Length=4044527 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || ||||||||| | || || || | Sbjct 542369 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 542310 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||| | ||||| | || ||||||||| || | || || ||| Sbjct 542309 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 542250 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | ||||| || ||||||| || Sbjct 542249 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 542190 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| ||||| || Sbjct 542189 AACATCCAGAAGGAGAGCACTCTTCACCTGGTGCT 542155 >seq151 Length=1813609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 227/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || ||| || | || | || ||||| ||||| || ||||| ||||| || ||||| Sbjct 1086170 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTT 1086228 Query 58023 -GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| | || || ||| | ||||| || || || ||||| ||| |||| || |||||| Sbjct 1086229 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGA 1086288 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || || || || ||||| || || || || || || || || | |||||||| | Sbjct 1086289 GCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCTCAC-T 1086347 Query 58142 TGTCAATAAACCGACGCGGGAT-CGCATCTTG---GACATTATCACCGAGGCGGTCGCGA 58197 || | |||||| | | | | ||| | || || |||||||| || ||| | Sbjct 1086348 TG---AAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACA 1086404 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| | ||||| | ||||| || || || || | || || |||||| || Sbjct 1086405 TCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACC 1086464 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 | ||| | ||||| ||||||||||||||| | ||| Sbjct 1086465 TCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTT 1086502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765441602240