Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq97 170 3e-37 seq151 134 2e-26 >seq97 Length=371559 Score = 170 bits (188), Expect = 3e-37 Identities = 374/554 (68%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| ||| | | || |||||| | | | ||| || || | || Sbjct 81601 ACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTG-CTCG 81659 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||||||||| || || || || ||| | ||| | ||| | || || || Sbjct 81660 ATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTG 81719 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||||||||| || | || ||||||| ||| ||| ||||| || || Sbjct 81720 GCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCG 81779 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | |||||||| | || || ||| | || ||| ||||||||||||| ||| | | Sbjct 81780 CGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAA 81839 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| |||||| || ||||||||| | || ||||| || | ||||||| || Sbjct 81840 GAACGGCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGG 81899 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAG 97164 || ||||| ||| |||| | || ||||| | ||| | || |||| | Sbjct 81900 TGATGAGTTCGAGAAGCTGTACGAGAAGTATGAGCAGGCTGGCAAAGGTCGCAAGACCA- 81958 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | | |||| |||||| | |||||| || ||||||| || || || | || Sbjct 81959 -TGAAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAACCCT 82017 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| ||||||||||| | | || || || |||||||| || |||||||||| Sbjct 82018 TTCATGCTCTACAAGGACAGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACCATT 82077 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 | ||||| || ||||| || || | |||||| |||| || ||| || ||| Sbjct 82078 CGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGTGCTCCCGATGAGGTCGCTGTT 82137 Query 97344 TGCGTTCTGGCATC 97357 ||| ||| ||||| Sbjct 82138 TGCAATCTCGCATC 82151 >seq151 Length=1813609 Score = 134 bits (148), Expect = 2e-26 Identities = 211/293 (72%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||| | ||| || | |||||| Sbjct 1085720 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 1085779 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AG---TTTAT 125134 |||||||| | |||| ||| | | |||| ||||| | || |||| || ||||| Sbjct 1085780 TCCAAGGATCAACACGACTGGAACAATCGTCTGACT---TCCGA-CGAGCAGTTCTTTAT 1085835 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGA 125193 || ||||| | ||||||||||||| ||| ||||| |||||||| || || | ||||| Sbjct 1085836 CTCTCACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGA 1085895 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 |||||| ||| | || || |||| ||| ||||| || || || |||||| Sbjct 1085896 -GCGATTCAGCGGCGAGGTCCAGATCCCTGAGG-CTCGATGCTTCTATGGTTTTCAAATC 1085953 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| || ||| | ||||| || | ||||| || ||||| | ||||| Sbjct 1085954 ATGATGGAAAACATCCACTCTGAGACCTACTCATTGCTCATTGATACCTACAT 1086006 Score = 132 bits (146), Expect = 7e-26 Identities = 335/503 (67%), Gaps = 25/503 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| |||||||||||| | ||| | || || || | ||| Sbjct 1086116 ATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCATCTTTTGCC 1086175 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||| || ||||| ||||| ||||| || ||||| ||| ||| ||| || Sbjct 1086176 CAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTCGCGTCC 1086235 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || |||||||| || |||| | |||||| | || Sbjct 1086236 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATT 1086295 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 ||||| || |||||||| ||| ||||| || |||| || | || ||| Sbjct 1086296 TCTCGTGATGAGGGCCTGCACACCGACTTCGC-------CTGTCTC-CTACACTCT---- 1086343 Query 125601 CCCGAGTGCAGATCC-AGCGATGAA-AAGGTCAT---CAACATTGTAACCGATGCCGTGA 125655 | || ||| || ||| | || || |||| | || | ||||| || || | Sbjct 1086344 --CACTTGAAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCA 1086401 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 || || || ||||| || ||||| | || || | | | |||||||||| Sbjct 1086402 ACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGG 1086461 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774 | || ||| | ||||| |||||||| || || ||||| || | | ||||| Sbjct 1086462 ACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCT---TGTGGCACTTGGCA 1086518 Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || ||||||||||| | || ||||| || |||||| | ||| || || | | Sbjct 1086519 ACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 1086578 Query 125833 GTAAGACCAACTTTTTCGAGAAG 125855 | ||||||||||| ||||||||| Sbjct 1086579 GCAAGACCAACTTCTTCGAGAAG 1086601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057606722720