Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-19 seq162 98.7 2e-16 >seq1 Length=4044527 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 1831794 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 1831852 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 1831853 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 1831893 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | |||| ||||||| || || |||| ||||| Sbjct 1831949 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATG 1832008 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 1832009 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 1832068 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 1832069 CTCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1832112 >seq162 Length=1764523 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 660127 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTAT 660069 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 || ||||| ||||||||||| || ||||||||| | |||| Sbjct 660068 TCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 660028 Score = 95.1 bits (104), Expect = 2e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| |||||| ||||||| || || |||| || | Sbjct 659969 TGATCTACGAGGAGACCCGTGGTGTTCTGAAGACCTTCCTCGAGGGAGTCATCCGCGACG 659910 Query 16596 CT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || || || ||||||||||| || || ||||| ||||| ||| | ||| ||||||| Sbjct 659909 CTGTTACA-TACACCGAGCACGCCAAGCGAAAGACCGTCACATCCCTCGATGTCGTCTAC 659851 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | || || |||||||| | | || || || || ||||| ||| Sbjct 659850 GCCCTCAAGCGACAAGGCCGCACCCTGTACGGATTCGGTGGTTAAACTT 659802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075042739196