Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq96 123 2e-23 seq1 98.7 8e-16 >seq96 Length=3495428 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || |||||||| || |||| ||||| ||||| | || Sbjct 1450018 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 1450077 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| || ||||||||||| || || || || Sbjct 1450078 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 1450137 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| ||| ||| | ||||| |||||| Sbjct 1450138 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 1450197 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | ||| | || || ||| Sbjct 1450198 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGT 1450245 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || ||| | ||||| || || ||| | | Sbjct 1450246 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 1450305 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || ||||||||||||||||| || || || || || Sbjct 1450306 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 1450365 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| |||||| | ||||||||| Sbjct 1450366 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 1450425 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 1450426 ATTCAGAAGGAGTCGACC 1450443 Score = 111 bits (122), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | | |||||| | ||| || | || Sbjct 1449814 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGACAATGTGAAGTCG 1449873 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || ||||| ||||| || || || ||||| ||||| Sbjct 1449874 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 1449933 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||| ||| ||||||| |||||||| ||||| ||||| ||| Sbjct 1449934 CAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACC 1449987 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || || | || ||| | ||| | | || Sbjct 1449530 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 1449589 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || ||||| || || ||||| || || || || Sbjct 1449590 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 1449649 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| ||||||| |||||||| || || || |||||| Sbjct 1449650 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACC 1449703 >seq1 Length=4044527 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| ||||| ||||| | Sbjct 542369 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 542310 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 542309 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 542250 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| || |||||||| ||| | || ||| ||| ||| | ||| ||| Sbjct 542249 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 542190 Query 22396 AACATTCAAAAAGA 22409 ||||| || || || Sbjct 542189 AACATCCAGAAGGA 542176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727120145180