Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 167 4e-36 seq96 149 1e-30 seq118 129 1e-24 seq85 129 1e-24 seq84 93.3 8e-14 >seq1 Length=4044527 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 542140 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 542199 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || |||| || ||||| || ||| Sbjct 542200 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 542259 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 542260 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 542319 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 542320 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 542366 Score = 84.2 bits (92), Expect = 4e-11 Identities = 217/328 (66%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 173117 CACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATG 173176 || ||||| || ||| |||| |||||| ||||| |||||| | || ||| Sbjct 1910997 CATTTTGCCGCCCAGTCCCACGTGGACCTGAGCTTCGGCAACTCGTACGGCTTCACCCAC 1910938 Query 173177 AACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAG 173236 | ||||||||| || || |||||||| |||||| | |||| | | | || || | Sbjct 1910937 ACCAACGTCTATGGAACTCACGTTCTTCTGGAAAGTGCGAAGA---AGGTGGGAGTTAAA 1910881 Query 173237 CGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAA 173296 || || || | | || || ||||| |||||||| |||| | | |||| | | || Sbjct 1910880 CGATTTATGCACATTTCCACAGACGAGGTATACGGTGAGATCCATGCGGGCCATGACGAT 1910821 Query 173297 GGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356 | ||||| | | | ||| | | || || |||||||| || || |||||| | | Sbjct 1910820 GTGCTCGA--ATCCAGCATCCTT-GCCCCGACCAACCCATACGCTGCGAGCAAGGCGGCT 1910764 Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416 ||||| ||| | | | | || || | | |||||| || ||||| || || Sbjct 1910763 GCCGAGATGCTAGTTCAGTCTTACCAGAAGAGCTTCAAGCTCCCCGTCATTGTTGTACGG 1910704 Query 173417 GGCAACAATGTGTATGGCCCGCATCAGT 173444 |||||||||| || ||||||||||||| Sbjct 1910703 AGCAACAATGTCTACGGCCCGCATCAGT 1910676 >seq96 Length=3495428 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || || || ||||||||||| || |||||| Sbjct 1450016 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1449957 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| || Sbjct 1449956 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 1449897 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 1449896 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 1449837 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 1449836 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1449800 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || || ||||| ||||| Sbjct 1450472 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 1450413 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 1450412 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 1450353 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | |||||| ||||| || || | ||||| || Sbjct 1450352 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 1450293 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || ||||||||||||||||| |||||||| Sbjct 1450292 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 1449732 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1449673 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || || || || || Sbjct 1449672 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 1449613 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 1449612 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 1449553 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| |||||||| Sbjct 1449552 TCAAGAGTGATGGTCTTTCCCGT 1449530 >seq118 Length=2933755 Score = 129 bits (142), Expect = 1e-24 Identities = 443/672 (66%), Gaps = 29/672 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| || ||||||||||||| || |||||| |||||| Sbjct 863708 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAGGTGGTTATCGATATGGGCGAAAGCG 863767 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 863768 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 863827 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||||||||| ||||| || || | ||| || ||||| ||||||||||| Sbjct 863828 ATGAG-CTCACCGGTGAGGACGTTGATCAGAGTGGACTTTCCGGCACCGTTGGGGCCAAT 863886 Query 225160 CACGCCAATCCGGGA--TGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCT 225212 ||| |||| ||||| || ||| ||| || | || | |||| | | Sbjct 863887 GACGGCAATACGGGAGCCGAGCGAGCA--CTGGAAGGAGATGTCGGCAATCTGAGGCTTG 863944 Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGC-TTCATGATGGCACGGTCCTT 225270 ||| |||| |||| |||| || | | | || || || || | |||| Sbjct 863945 GAGGTACCAG---GGTACTGGAAGGACATG-CGGGTGGCGCGCAGAATAGCCTTGGCCTT 864000 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 || | | |||||| ||||| |||||||||||||| ||| || | | | | Sbjct 864001 GGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAGGCGCC 864060 Query 225331 CAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || |||||||||||| ||| ||| | | || || || || |||||| || Sbjct 864061 GAGCTCGTAGTAAGATCGAGCAGATGGGACACGCTG-GACAAAGGCCTTCAGGTTACCCC 864119 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 || | ||||||||| | |||||| ||||| || ||| | ||| || ||| Sbjct 864120 TGTAACGCTTGAGCTTGAAG---CGCTCGTAGTGAACGATGTGCTG-GCAGACGTTGTCG 864175 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| |||||||||||| || ||||| || | || | | | | || ||||| Sbjct 864176 AGGAAGGTAGAGTCGTGGGAGACGATGATAGAGGTGCAAG---GGGA-GTTCTGGAGGTA 864231 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| ||||| | || |||| ||||| ||||| ||||| |||||||| Sbjct 864232 CTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAG 864291 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || || | | | || || ||| || |||| ||||||||| |||||||| || || Sbjct 864292 AATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAGCCACCAGA 864351 Query 225628 CAGGGAGCCGAT 225639 |||| || ||| Sbjct 864352 AAGGGCGCTGAT 864363 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||| ||||| | ||| | || || ||||| | ||||| |||||| | ||| Sbjct 864545 GGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTTGACTTGCCAGAACCG 864604 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||| ||| || |||||| | | || ||||||| | ||| | || ||| ||| Sbjct 864605 TTGGGGCCGCAAAGACCGTAACGCTGGCCACGCTTGAGGCGGAGATGGGTCTGGTTGAGG 864664 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 || |||||| |||| ||||| |||||||| || | ||| ||||||||||||||||| Sbjct 864665 AGAATCTTGGCACCGTAGGCGAGGGAGAAAGTACAGTTGCAAAGGTCCTCACCCTCCTCA 864724 Query 225998 GTCTCCTTTGCCTTGTC 226014 |||| ||||||| Sbjct 864725 TCGTCCTCCTCCTTGTC 864741 >seq85 Length=3693789 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 3530917 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 3530976 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || ||||| || ||||| || || ||||| | |||||| || Sbjct 3530977 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 3531036 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||| ||||| Sbjct 3531037 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 3531095 >seq84 Length=778094 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| | ||||||||||||||| || || || | ||| | | || | | |||| Sbjct 546797 GTCCAAGAAGCCAGAGTCGTGAGAGACGATCA--GACTGGTGATGTCGGGGTGCGTCTTG 546854 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| || ||||| || | |||| |||| || | ||||| |||||||||||||| Sbjct 546855 AGGTAGGTTTCCAGCCAGGCGATGTTGGTGACATCAAGATGGTTAGTAGGTTCGTCCAGG 546914 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || | |||||| ||| ||||| || | ||||| |||||||| ||||| || Sbjct 546915 AGGAGAACGTCAGCGCGCTGGAGCATGGCTCGGGCGAGAGCAAGCTTCATCTTCCAACCA 546974 Query 225623 CCGGACAGGGAGCC 225636 || ||||||||||| Sbjct 546975 CCCGACAGGGAGCC 546988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620418511840