Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq97 329 6e-85 seq151 205 2e-47 >seq97 Length=371559 Score = 329 bits (364), Expect = 6e-85 Identities = 1109/1706 (65%), Gaps = 83/1706 (5%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| ||| || |||| ||| |||| | ||||||||||||||||||||||| | Sbjct 83062 TGAACTGGATGGGAGCAGCGGCAGCCGTGGTGCGGAGGTAGTACATGCCGGTCTTGAGAC 83003 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| | || ||||||| || | ||| ||| || ||||| | Sbjct 83002 CGAGCTTCCAGCCTGCGAAGTGCATGCTGGTGATCTTGCCCATTGTG------GGGTCTT 82949 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | | || |||||||||||| ||| |||| ||||| | || || |||| Sbjct 82948 TCATGTG------GATGTTGAGGGACTGAGACTGATCGATGAAGGCACCACGATCGGCGG 82895 Query 243921 CCATGGTGATGAGGTCCTTC---TGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGA 243977 ||| || |||| ||| || || ||||| || |||||||||||| | ||| | Sbjct 82894 ACATT-TG--GAGGACCTGGCGTTGGGAAATCTCCCACACCGTCTTGTAGAGCGACTTAA 82838 Query 243978 GGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGC 244037 || || || | ||||||||| | || || || | |||| || | Sbjct 82837 TGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTCAGAAATGATGCGGTTCT 82778 Query 244038 GCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTCA 244094 |||| ||| ||||| ||||| |||| ||| || | ||| | || | Sbjct 82777 TCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTT---CAAGAGCCAGGGGTTAA 82721 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || ||||||||||||| ||| | | ||||||| Sbjct 82720 CAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGGTATAAGGCTCGA 82661 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT--GGGCGACACCAG 244212 || || | |||||||| ||||||| || || ||||| ||||| |||||| | || Sbjct 82660 AGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGA--AG 82603 Query 244213 CAGACTGTTCCTCACGCCGTGC--CT----CTGGATGCGGAGTCTGAGCTCGTTCCAGTC 244266 || ||||| | | |||||| || ||| ||| || | ||| |||||| Sbjct 82602 CAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCGAAGGGT---CTC---CCAGTC 82549 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | | | ||| | | || |||| |||||| |||||||| || | |||| Sbjct 82548 CCAAAGGTCGGAGGGCT--TCACGTT-------CCACATATCAAACTGGAGGATACCCTC 82498 Query 244327 -GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAG 244384 | || |||| |||| | || | | ||| ||||| || || || || | || | Sbjct 82497 AGATGCTGGGGAA-CCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCACCG 82439 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 |||| | | | |||| ||| |||||||| |||||| |||||||| || || ||| Sbjct 82438 AGGCCGTCAAAG-CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCC 82380 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | | | |||||| |||| | || |||| | || || || ||||| || ||| Sbjct 82379 TCGGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCG 82320 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || ||||||| ||| ||| ||||| | ||| ||| | |||||| |||| Sbjct 82319 ACACCAATGGGTCGGTGACGCATGTTGCTGTTGCGGGCCTCGATGATGGGGTAGTGGTTG 82260 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 ||||||| | |||||| | ||||||| || | | ||| ||| ||| ||| Sbjct 82259 ACGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGG 82200 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| | || ||||| | | || | ||||| || || | Sbjct 82199 AAGTCGTA---GCAGC---CCTCGTTG-TAGTCA-----ACAAAGGAAGGCAGAGCCAAT 82152 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 || || ||||| || || ||||| || | ||||| || ||||| ||||| Sbjct 82151 GATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAA 82092 Query 244745 AGGTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 ||||| ||||| ||||||||||||| || || ||| || ||||||| | Sbjct 82091 AGGTTGGAACTGCGA---ATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTG 82035 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 ||||||||||||||||| || ||||| ||| ||| || | | || | | ||| Sbjct 82034 TCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCAC 81975 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 || | | ||||| | ||| ||||| | ||||| | ||| || |||||| Sbjct 81974 AGCTTCTGGGCCTTCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGC 81915 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||||||||| || || || | || ||||||||| |||||||||||| Sbjct 81914 TTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGA 81855 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||| |||||| | || ||| | || |||||| || ||||||||||| |||||| | Sbjct 81854 GTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAG 81795 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || | ||| | | | || ||| ||| |||||| | ||| ||||| || ||| Sbjct 81794 AACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCA 81735 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 || |||||| ||||||||||||| | ||| | |||| || ||||| ||||||||||| Sbjct 81734 AAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCG 81675 Query 245162 CCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||| | | | |||||| |||||||| || || |||| | | || Sbjct 81674 CCCTGGTCGA----CGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACC 81619 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA--GGTTGCTGATG 245275 || ||| ||||||||| || ||||| | ||| || | | || | ||| | Sbjct 81618 ATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTT 81559 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || | || | || || || ||||||||| | ||| || |||||| |||||| Sbjct 81558 GAGA--CCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAG 81501 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || |||||||| |||||||| | ||| |||||||| |||||||| |||| Sbjct 81500 ATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGA 81441 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGG 245421 ||| | | || |||||||| || || Sbjct 81440 GGGGTACCCGCATTGAACAGGGTTGG 81415 >seq151 Length=1813609 Score = 205 bits (226), Expect = 2e-47 Identities = 597/913 (65%), Gaps = 80/913 (9%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| |||||||| ||||| ||| Sbjct 1085720 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 1085779 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGAGA----ACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || | |||||| |||| |||| || || Sbjct 1085780 TCCAAGGATCAACACGACTGGAA--CAATCGTCTGACTTCCGACGAGCAGTTCTTTATCT 1085837 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || |||||||| ||||||||||| ||||| |||||||| ||| ||| Sbjct 1085838 CTCACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGAGC 1085897 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | |||||| || |||||||| || || || || | Sbjct 1085898 GATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAATCATGA 1085957 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | || ||| | ||||||||| ||| | | |||||| | || |||||| ||| | Sbjct 1085958 TGGAAAACATCCACTCTGAGACCTACTC---ATTGCTCATTGATACCTACATCAAGGAGC 1086014 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA-----TGCCC----------- 42635 | | | | || | || ||||| ||||| ||||| | | ||| Sbjct 1086015 CTGCCCAACGCACTTACCTCTTCAATGCCATTGAGACCAGTATGTCCCCCACCATGTCTC 1086074 Query 42636 ---------TGCAT-CAAG----------------------------AAGAAGGCGGACT 42657 ||||| |||| |||||||| || | Sbjct 1086075 AGCTCCACGTGCATACAAGCTAACCAGCTCCAGTTCCTTGCATCCGAAAGAAGGCCGATT 1086134 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 |||| | |||||| || | | || | || | || | | || | ||||| || || Sbjct 1086135 GGGCTATTCGGTGGATCCAG-GACAAGAACTCATCTTTTGCCCAGCGTCTGGTTGCTTTC 1086193 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | ||||| ||||| || |||||| || || ||||| |||||||||||||||||| || Sbjct 1086194 GCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTCGCGTCCATCTTCTGGCTCAAGAAG 1086253 Query 42777 AA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || ||||| || | || ||||| ||||| ||||| | || ||||| || Sbjct 1086254 CGTGGTCTC-ATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTGATGAGGGCCT 1086312 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA-AGCCCTCGAAGG 42894 ||| | ||||| ||||| ||||| ||| ||| | | | || |||| | ||| Sbjct 1086313 GCACACCGACTTCGCCTGTCTCCTACACTCT---CACTTGAAGAACCGAGCCAGC-AAGC 1086368 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 || | || | |||||||| || || || | |||||| |||||||||| || || Sbjct 1086369 AGATCATTCGTGAGATCATCACCGACGCTGTCAACATCGAGCAGGAGTTCCTGACCGAGG 1086428 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGT-GCAAGTACATCCAGTAC 43013 | ||||| | || | ||||||||| ||||||||| |||| |||||| ||| Sbjct 1086429 CACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGAAGCAA-TACATCGAGTTT 1086487 Query 43014 GTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 || ||||||| ||| || ||| || ||| || | | ||||| | | ||| Sbjct 1086488 GTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATT-TACAAGTCTGCCAACCC 1086546 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||||| |||||||||||||| | | |||||||||||||| ||||||||||| || Sbjct 1086547 CTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 1086606 Query 43133 CGCCGACTACCAG 43145 | || |||||| Sbjct 1086607 TGGTGATTACCAG 1086619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337169670720