Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq151 109 5e-19 seq96 95.1 1e-14 seq1 89.7 5e-13 >seq151 Length=1813609 Score = 109 bits (120), Expect = 5e-19 Identities = 343/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || ||||| | ||||| || ||||||| || | | | | | Sbjct 1086107 GTTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCA 1086166 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-GCAG 52444 | | ||| |||| |||| || ||||| || ||||| | |||| ||| | | | Sbjct 1086167 TCTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTG 1086224 Query 52445 CTTTGCCG-CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 |||| || ||||||| | | || | | || | ||||| ||| |||| ||| || Sbjct 1086225 CTTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCA 1086284 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563 ||||| | || || || || || || |||||||| ||||| || || ||| ||||| Sbjct 1086285 ACGAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACT- 1086341 Query 52564 CGCGCGTGA----CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619 | | | ||| |||| | | | | || | || |||| || ||| || || Sbjct 1086342 CTCACTTGAAGAACCGAGCCA--GCAAGCAGAT-CATTCGTGAG-ATCATCACCGACGCT 1086397 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || ||||| ||||||| | || | || ||||| || || |||||||||||| Sbjct 1086398 GTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAAC 1086457 Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739 || | |||| | |||||||||||||| || || ||||| | ||| || || Sbjct 1086458 TCGGACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGG- 1086516 Query 52740 CAGCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | | | || ||| || ||| || || || || ||| | ||||| || |||| Sbjct 1086517 CAACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 1086576 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| || || || || Sbjct 1086577 CGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 1086615 >seq96 Length=3495428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| || ||||| ||||| || || || |||| Sbjct 1450213 TTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGG 1450154 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 |||| || ||||| ||||| || || ||||| || || || ||| | || | || Sbjct 1450153 CGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATC-CTGAATCTTCGACTTG 1450095 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||||| ||||||||||| | || | || ||||| |||| || Sbjct 1450094 ACATTG-TCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 1450036 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 1450035 CTTGACAAAGATTTGCAT 1450018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | | |||||||| ||||||||||| || ||| Sbjct 1450472 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 1450413 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | | | || || ||||| ||||| || || Sbjct 1450412 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 1450353 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | || || | || || | Sbjct 1450352 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATAGTATCAGAAGATTCGA 1450295 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || || || || || || ||||||||||| Sbjct 1450294 CCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246 >seq1 Length=4044527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || || || || || || |||| | Sbjct 542175 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 542234 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 542235 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 542294 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||||||||| | || | ||| || || || || || || || Sbjct 542295 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 542354 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 542355 GAAGATCTGCAT 542366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261333035840