Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq151 109 5e-19
seq96 95.1 1e-14
seq1 89.7 5e-13
>seq151
Length=1813609
Score = 109 bits (120), Expect = 5e-19
Identities = 343/519 (66%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| | || || ||||| | ||||| || ||||||| || | | | | |
Sbjct 1086107 GTTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCA 1086166
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-GCAG 52444
| | ||| |||| |||| || ||||| || ||||| | |||| ||| | | |
Sbjct 1086167 TCTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTG 1086224
Query 52445 CTTTGCCG-CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503
|||| || ||||||| | | || | | || | ||||| ||| |||| ||| ||
Sbjct 1086225 CTTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCA 1086284
Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563
||||| | || || || || || || |||||||| ||||| || || ||| |||||
Sbjct 1086285 ACGAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACT- 1086341
Query 52564 CGCGCGTGA----CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619
| | | ||| |||| | | | | || | || |||| || ||| || ||
Sbjct 1086342 CTCACTTGAAGAACCGAGCCA--GCAAGCAGAT-CATTCGTGAG-ATCATCACCGACGCT 1086397
Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679
|| ||||| ||||||| | || | || ||||| || || ||||||||||||
Sbjct 1086398 GTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAAC 1086457
Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739
|| | |||| | |||||||||||||| || || ||||| | ||| || ||
Sbjct 1086458 TCGGACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGG- 1086516
Query 52740 CAGCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798
|| | | | | || ||| || ||| || || || || ||| | ||||| || ||||
Sbjct 1086517 CAACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 1086576
Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| ||||||||||| || || || ||
Sbjct 1086577 CGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 1086615
>seq96
Length=3495428
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || |||||||||||| || ||||| ||||| || || || ||||
Sbjct 1450213 TTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGG 1450154
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536
|||| || ||||| ||||| || || ||||| || || || ||| | || | ||
Sbjct 1450153 CGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATC-CTGAATCTTCGACTTG 1450095
Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
|||| || | ||||||| ||||||||||| | || | || ||||| |||| ||
Sbjct 1450094 ACATTG-TCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 1450036
Query 138597 TTTTACAAAAATCTGCAT 138614
|| ||||| || |||||
Sbjct 1450035 CTTGACAAAGATTTGCAT 1450018
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | || | | | |||||||| ||||||||||| || |||
Sbjct 1450472 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 1450413
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | | | || || ||||| ||||| || ||
Sbjct 1450412 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 1450353
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || |||| || | || || | || || |
Sbjct 1450352 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATAGTATCAGAAGATTCGA 1450295
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | ||| || || || || || || || |||||||||||
Sbjct 1450294 CCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246
>seq1
Length=4044527
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || || || || || || |||| |
Sbjct 542175 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 542234
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 542235 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 542294
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||||| ||||||||||| | || | ||| || || || || || || ||
Sbjct 542295 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 542354
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 542355 GAAGATCTGCAT 542366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261333035840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |