Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq96 116 4e-21
seq151 111 1e-19
seq1 98.7 9e-16
seq85 95.1 1e-14
>seq96
Length=3495428
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| |||||||| | || |||||| ||| || ||||| || |||
Sbjct 1450442 GTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCA 1450383
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | || | ||||||||| || || || |||||||||||||| || ||| ||||
Sbjct 1450382 GCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTG 1450323
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| || || | | ||||| |||| || | ||| |||||||| || ||
Sbjct 1450322 ACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTC 1450263
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 1450262 TTGACGAAAATCTGCAT 1450246
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || ||||| ||||||
Sbjct 1449702 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 1449643
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| ||||| ||||||||||||||| ||| ||| |||
Sbjct 1449642 GCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTA 1449583
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||||| |||||| || | || | || || || ||||
Sbjct 1449582 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 1449528
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || ||||| || ||||| ||| | || || ||| || ||||| || |||
Sbjct 1449986 GTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 1449927
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| ||||| || ||||| || || |||||||||||| ||| ||| |||
Sbjct 1449926 GCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTC 1449867
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| |||| | |||||| |||| ||| | || ||||| || || ||
Sbjct 1449866 ACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1449807
Query 127097 TTTAC 127101
|| ||
Sbjct 1449806 TTGAC 1449802
>seq151
Length=1813609
Score = 111 bits (122), Expect = 1e-19
Identities = 330/502 (66%), Gaps = 19/502 (4%)
Strand=Plus/Plus
Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCA-CTCTGGCCGAACGTTT 47143
|||||||| ||||| || || || | || | ||| ||| || | ||| | ||| |
Sbjct 1086125 AAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAAC-TCATCTTTTGCCCAGCGTCT 1086183
Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTT 47202
| | |||||||| ||| ||||| | |||||| || ||||| ||| | || || |
Sbjct 1086184 GGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTTCGCGTCCATCTTCT 1086242
Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262
| || | || | ||||| ||| | || || ||||||||| || || | |
Sbjct 1086243 GGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTG 1086302
Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA---CACT---AGAGTCGATC 47316
| || |||||||||||| |||| ||||||||| ||||| |||| ||| ||| |
Sbjct 1086303 ATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACTCTCACTTGAAGAACCGAGC 1086360
Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376
| | || | | | | || || | |||| || ||| ||| ||| ||
Sbjct 1086361 CAG-------CAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACATCGAGCAGG 1086413
Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436
|||| | ||||||| ||||| || | |||| |||||| |||| | ||||
Sbjct 1086414 AGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGAAGC 1086473
Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496
| |||||||| ||||| |||||||| || || || || | |||||||||
Sbjct 1086474 AATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTTACA 1086533
Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556
| | | || || ||||| || ||| | ||||| || || | |||||||||||||| |
Sbjct 1086534 AGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCT 1086593
Query 47557 TCGAGAAGCGCGTCGGCGAATA 47578
|||||||||| || || || ||
Sbjct 1086594 TCGAGAAGCGTGTTGGTGATTA 1086615
>seq1
Length=4044527
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || | ||||| || | || ||| || || || ||||| |||
Sbjct 542137 GCACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 542196
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || || ||| || ||||| || || ||| |||| | ||||||||| || ||
Sbjct 542197 CTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGG 542256
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062
|| || |||||||||||| ||| || ||||| |||| |||| ||||| | | |||
Sbjct 542257 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGACTC 542315
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || || ||||||||
Sbjct 542316 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 542366
>seq85
Length=3693789
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| ||||| ||| |||||
Sbjct 3530917 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 3530976
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|||||||||||||| || || || |||||||| ||| ||| || ||||| | ||
Sbjct 3530977 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 3531036
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| |||||| || | ||| | || ||||| || || || || || |||
Sbjct 3531037 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 3531096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499777673280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |