Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 8e-24
seq96 113 5e-20
seq85 105 8e-18
>seq1
Length=4044527
Score = 125 bits (138), Expect = 8e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||||| ||||| ||||||||| || || || | || ||
Sbjct 542157 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 542216
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||||| || | ||||||||||| | || | | ||||||||||
Sbjct 542217 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 542276
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| ||||| ||| | | | |||||| || ||||| || | ||||| || |
Sbjct 542277 GATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 542335
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
| ||||| || || || || ||||| ||||| ||||
Sbjct 542336 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGC 542371
>seq96
Length=3495428
Score = 113 bits (124), Expect = 5e-20
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || |||||
Sbjct 1449697 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 1449638
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||| || | || | || |||||||||| ||||||| ||| | |||
Sbjct 1449637 GATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGT 1449579
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | ||||| || || || || | |||||||| || |||||||
Sbjct 1449578 TGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 1449528
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| | || || | || || |||||||| ||||||||
Sbjct 1450209 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 1450150
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | |||||| ||| |||||| ||||| |
Sbjct 1450149 GATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATT 1450090
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||||| || ||||| || | ||||| || || || |||| || || ||
Sbjct 1450089 GTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGAC 1450030
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 1450029 AAAGATTTGCAT 1450018
Score = 98.7 bits (108), Expect = 1e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| ||||||||||| || || || | || || ||||||||||| || ||
Sbjct 1449980 TCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 1449921
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||| ||||||| || | | |||||||||| ||||||| ||| | |
Sbjct 1449920 ATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTG 1449861
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || || || || || | |||||||| ||||| || || || || ||
Sbjct 1449860 TCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1449802
>seq85
Length=3693789
Score = 105 bits (116), Expect = 8e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| |||||||| | || || |||||||| |||||||| |
Sbjct 3530915 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 3530974
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| |||||||| || | || | | |||||| ||| |||||| ||||| |
Sbjct 3530975 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 3531034
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| |||||||| || || || || |
Sbjct 3531035 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 3531094
Query 46584 A 46584
|
Sbjct 3531095 A 3531095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237184737440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |