Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq151 178 1e-39 seq1 125 7e-24 seq96 120 3e-22 seq85 105 7e-18 >seq151 Length=1813609 Score = 178 bits (196), Expect = 1e-39 Identities = 333/482 (69%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 1086600 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1086541 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | ||||| ||| | |||| | | | || || || | |||||| || ||| Sbjct 1086540 GCAGACTTGTAAATCTTCTCGTTGCCAA---GTGCCACAAGAAGACGGTCGGCAACAAAC 1086484 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||||||| |||| || | || | ||||| ||| |||| ||||| || || Sbjct 1086483 TCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA-AGGCAGTGCCTC 1086425 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || ||||||||| ||| |||||||||| ||| || | || | | | Sbjct 1086424 GGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACGAATGATCTGCTT 1086365 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | || | | ||| || | | | || || |||||| |||| |||||| Sbjct 1086364 GCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTC 1086305 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | |||||||| |||||| ||| |||||||| |||||||| || || || ||||| Sbjct 1086304 ATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAG 1086245 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| |||||| || ||||| | ||||| ||||| |||||||| || Sbjct 1086244 CCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAAC 1086185 Query 133041 CAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 ||| |||| | | || | || ||||| | ||| |||||| || | ||||| |||||| Sbjct 1086184 CAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG--GATCCACCGAATAGCCCAATCGGCC 1086127 Query 133099 TT 133100 || Sbjct 1086126 TT 1086125 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||| || ||||| || || | || ||||| | ||| ||||| ||||||||| Sbjct 1086004 GTAGGTATCAATGAGCAATGAGTAGGTCTCAGAGTGGATGTTTTCCATCATGATTTGAAA 1085945 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| | ||| || || ||| ||||| |||| || Sbjct 1085944 ACCATAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCTGAATCGCTCAACCAAGTT 1085885 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||||||||| || |||||| || ||||| || | ||| ||| || | Sbjct 1085884 TTCATTGACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGATGTGAGAGATAAAGAACTG 1085825 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| | ||| || | ||||||| | ||||||||||| || | ||||| Sbjct 1085824 CTCGTCGGAAGTCAGACGATTGTTCCAGTCGTGTTGATCCTTGGACAGATCAATTTCCTC 1085765 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 1085764 GGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 1085729 >seq1 Length=4044527 Score = 125 bits (138), Expect = 7e-24 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 542369 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 542310 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | |||| | || || |||| ||||| |||||||||||| | || Sbjct 542309 TCCGACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 542251 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || || | || ||||| | |||||| Sbjct 542250 CCAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTA 542191 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || ||||||| || Sbjct 542190 CAACATCCAGAAGGAGAGC-ACTCTTCACCTGGTGCTCCG 542152 >seq96 Length=3495428 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| |||| |||||| | | || | | | Sbjct 1449800 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 1449859 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| || ||| ||||||||||||| || | Sbjct 1449860 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 1449919 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| ||||| || || | || |||||| |||||||||||||||||||| Sbjct 1449920 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 1449979 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || | || || ||| Sbjct 1449980 AATCTACCCTTCACCTCGTCCTCCGT 1450005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || |||||||| | || |||||| || | |||| | | | |||| |||| Sbjct 1449530 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAGTC 1449588 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || || | || || ||||| || || | ||| || || Sbjct 1449589 GAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAA 1449648 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || |||| ||||||||| ||||||||||||||| ||||| Sbjct 1449649 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1449696 >seq85 Length=3693789 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | | Sbjct 3531095 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 3531036 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || |||||||||||| | || || ||||| | Sbjct 3531035 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 3530976 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | ||||| ||| ||||||||||||||| ||| Sbjct 3530975 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 3530916 Query 38433 G 38433 | Sbjct 3530915 G 3530915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171724628480