Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq85 298 7e-76 seq129 102 1e-16 seq97 100 4e-16 seq1 93.3 5e-14 >seq85 Length=3693789 Score = 298 bits (330), Expect = 7e-76 Identities = 994/1533 (65%), Gaps = 35/1533 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || |||| || ||||| | ||| || || || || || || Sbjct 715043 TCATCCTCCTCCTTGAACTTCTCGGCATCGGAAAGCATGCGCTCGATATCCTCCTTGGAC 714984 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || ||||||| | ||| || || | | |||| || | Sbjct 714983 AAGCGACCCTTGTCGTTGGTGATGATAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 714924 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||| | |||||| | || | || || || | Sbjct 714923 GCGGAGACGTTCATGATACCGTTGGCATCGAGATCGAAGGTAACCTCGATCTGAGGAACA 714864 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||||| || || | || || | || | | |||| ||| | Sbjct 714863 CCACGGGGGGCAGGGGGAATGCCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 714804 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTG 6866 | || || ||||| || || || | ||| | ||||| || || || || Sbjct 714803 GTGCGCTGGCGCTCACCCTCGTAAACCTGAATGAGGACACCG--GGCTGGTTGTCGGAGA 714746 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | ||||| | ||||| || || || | ||||| | | || Sbjct 714745 AGGTAGAGAAGACCTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 714686 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| || ||||| ||| |||| || || || ||||| | ||||| ||| | | Sbjct 714685 TCATCATGCCACCAGCAGTCTCGATACCGAGGGAGAGAGGGGCAACGTC---GAGAAGGA 714629 Query 6987 GG-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCG 7037 || ||| || || || | | ||||| | | |||||||| || || | Sbjct 714628 GGATCTCGCTGGTGGACTTGGAGCTGGTG---TCACCAGACAGAATGGCGGCCTGAACGG 714572 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 714571 CGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 714512 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || | | | | || | ||||| || || || |||||||| | |||| Sbjct 714511 AGTAGTCGGTAATGAGCTTCTGGACACGGGGGATACGGGTGGAGCCACCGACGAGGACGA 714452 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || |||||||| || | ||| || ||||| || | | Sbjct 714451 TCTCGTGGACGAGGCTCTTATCGATTTTCGCGTCGGCGAGGACACGGTCGACGGGCTGGA 714392 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || ||||| | ||| || || ||||| ||||| || ||||| ||||| || | Sbjct 714391 TAGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCTCGGGTGATGGAGGTGT 714332 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || || || || || | || || || | || || | Sbjct 714331 AGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCGATAGAGGTCTGCGCGGAGGAGGAAA 714272 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 |||||||| || ||||| || || || || | ||| ||||| || || || | Sbjct 714271 GAGTTCGCTTGGCACGCTCGCAGGCAGTGCGGAGACGTCGAAGCGCGCGAACATTGGAGC 714212 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | |||||| ||||| || | ||| || || | | ||||| || ||| | | Sbjct 714211 TCAAATCTTTTTTATGCTTTCTTTTGAATTCATTAACAAAGTGGTTAACGAGACGGTTGT 714152 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || ||||||| ||| || || || || || | ||||| || |||||||| Sbjct 714151 CGAAGTCCTCGCCACCCAGGTGAGTGTCACCAGCAGTTGACTTGACCTCGAAGATACCCT 714092 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | | |||||||| || ||||||||||| || || || ||||| |||| Sbjct 714091 CCTCGATGGTGAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGT 714032 Query 7578 T-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| || | || | ||||| ||||||||||| || || || || || || || || Sbjct 714031 TGCGT-TCACCCTCAATCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCG 713973 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| ||||||||||| | ||||| || || || || || Sbjct 713972 TTGATGATTCGGAGGACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGGCGC 713913 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||| |||||||| ||||| || ||||| |||| | || ||| |||||| Sbjct 713912 TGGCTATCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTGTTAACGGTCTCACCGAGG 713853 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| || || || ||||| ||||| ||||| || | | Sbjct 713852 TAGGCCTCAGCGGTCTCACGCATCTTAGTGAGGACCATGGATGAGATCTCCTCGGGGGTG 713793 Query 7817 AACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC--- 7872 || || | ||| || || || || || || || || ||||| || || |||| Sbjct 713792 AA-GGTCTTGTTCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTT 713740 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | ||| | | | | ||||| ||| | ||||||| || ||||| Sbjct 713739 GTCGATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGCTGAACTT 713680 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | |||||| || || || || ||||| | ||||||||||| ||||| Sbjct 713679 GCGGCCGATCAAACGCTTGGCGTCGAAGACGGTGTTCTGAGGGTTCATGGCGACCTGGTT 713620 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || ||||| ||||| || | || || || ||||| | || || || Sbjct 713619 CTTGGCGGCATCTCCGATCAGACGCTC---GGTGTCGGTGAAACCGACGAAGGAAGGAGT 713563 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 |||||||| || |||||||| ||||| || || Sbjct 713562 GGTTCGATTGCCCTGGTCGTTGGCAATGATATC 713530 Score = 140 bits (154), Expect = 4e-28 Identities = 362/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || |||||||| ||||| || ||| || | || ||| | | || Sbjct 344724 AGGTCCTCGAATCGGGCACGGGTGATGGACATAGTGAAGTCCTCACCATCGAAGAGAGAG 344783 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || || || | || || || | || | || ||||| || ||||| || | Sbjct 344784 TCAATCTCGATAGTGGCCTGAGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 344841 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || || || || || | ||||| | ||| ||||| || || Sbjct 344842 CAGTTCGGAGACGGCGCAGAGCGCGGGGATCGCCGGAGAGATCCTTCTTGCTCTTGCGGG 344901 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| |||| | | |||||||| | |||||||| || Sbjct 344902 TGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGACCACCCAGATGG 344960 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 344961 GTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTGAGGAGGGACACA 345020 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | || || ||||| || | ||| | |||| Sbjct 345021 TCGAAAGTACCACCACCGAGATCGTAGATCAGGACGTTGCGCTC--CTTCTCAG-ACTTA 345077 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| ||||| || || || || || || || || || || || | Sbjct 345078 CCGGCGCCAAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGGACG 345137 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || ||||| || ||||| |||||| Sbjct 345138 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAG 345197 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | ||| || | | ||| ||||| || || | | || || || || Sbjct 345198 GCGGGAACAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCC 345257 Query 7775 TTCAT 7779 ||||| Sbjct 345258 TTCAT 345262 >seq129 Length=2409468 Score = 102 bits (112), Expect = 1e-16 Identities = 224/336 (67%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| || ||||| | ||| || || || ||| | ||||| || || | ||| Sbjct 1397037 ATCGAAATCCTCGCCACCGAGGTGAGTGTCACCGTTGGTGGACTTGACCTCGAAAACACC 1397096 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | || | || | |||||| ||||||||||| || || ||| || Sbjct 1397097 GTTCTGGATCTCCAAGATGGAGATATCAAAGGTACCACCACCAAGATCGTAAACAGCGAC 1397156 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | ||| | || ||| ||||||||||| || | ||| || || || || || Sbjct 1397157 GACCCGGTCGGCCTC------CTTCTCGAGACCGTAGGCCAAAGCAGCGGCAGTAGGCTC 1397210 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||| | ||| ||| ||| ||||||| ||| | ||||| || || ||||| Sbjct 1397211 GTTAACGACACGGAGAACGTTGAGGCCAGAAATCTGACCGGCATCCTTGGTACTCTGTCG 1397270 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || |||||||||||||| ||||| || ||||| |||| | ||| ||| ||| Sbjct 1397271 CTGAGAGTCGTTAAAGTAGGCGGGGACAGTGACGACAGCGTTCTTGATGGGCTTTGAGAG 1397330 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| | || || | || ||||| ||| | || || Sbjct 1397331 ATAAGCCTCAGCCGTTTCCTTCATCTTGTTGAGGAC 1397366 >seq97 Length=371559 Score = 100 bits (110), Expect = 4e-16 Identities = 291/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || || || |||||||||| ||| || ||||||| ||| | || | ||| ||| | Sbjct 81836 TCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGG 81777 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 || ||||| | || || ||| || | || | || || | || ||||||||||| Sbjct 81776 GCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAG 81717 Query 105679 GGTTCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCTTGATTGACATA 105731 || || | || | || | || ||| ||| | ||||| || | ||| || Sbjct 81716 GGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC----TGGTCGACGTA 81661 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 || || || ||| | || || | ||| ||||| | ||||| ||| || || || || Sbjct 81660 TCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTGGT 81601 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || ||| | || | ||||| | ||| |||| | || || || || || Sbjct 81600 ACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGACCGATGCCTCCTGC 81541 Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911 | ||| ||| ||||| || | || ||||| ||||||||||| || ||||| Sbjct 81540 CATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGTCTTC 81481 Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACA 105970 ||| | ||| |||||| || || |||| || || ||| || ||||| |||||||||| Sbjct 81480 CTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGG-CTGAGGGGTACCCGCATTGAACA 81422 Query 105971 GAGTTGGTGTTGCATGAATGAACA 105994 | ||||||| || ||| |||||| Sbjct 81421 GGGTTGGTGAAGCGTGAGTGAACA 81398 >seq1 Length=4044527 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||||| || ||| || |||| ||| Sbjct 1244472 ATCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGACACC 1244531 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 1244532 CTGGTCAATGGAGAGAAGAGACACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 1244588 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| ||| | | | |||| || ||||| || |||||||| || || || || | Sbjct 1244589 AATC-TGTCGCTCGCCGTCGGTCTTGTCCAGACCATAAGCGATAGCGGCGGCGGTGGGCT 1244647 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || || ||| ||||| ||||| | | ||||| || || || |||| Sbjct 1244648 CGTTGACAACTCGGAGGACGTTGAGGCCGGCAATGATACCGGCATCCTTGGTAGCCTGTC 1244707 Query 7695 GTTG 7698 | || Sbjct 1244708 GCTG 1244711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131434464480