Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq97 140 1e-27 seq151 132 1e-25 seq85 122 3e-22 seq79 89.7 2e-12 >seq97 Length=371559 Score = 140 bits (154), Expect = 1e-27 Identities = 338/510 (66%), Gaps = 9/510 (2%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| ||||| |||||||| | ||||||||||| ||||| | Sbjct 82103 ATCTCAGTGCAAAGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGG 82044 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || || |||||||| || ||| | ||| | || || || |||| || |||| || Sbjct 82043 TTGCAGCTGTCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATG 81984 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| | |||| || |||||| ||| Sbjct 81983 GCATACCACAGCTTCTGGGCCTTCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTC 81924 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 |||||| | | | || |||||||| |||||| || || ||||||| || |||| Sbjct 81923 TCGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGG 81864 Query 155880 CAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| || || ||| |||||| ||| || | ||| | Sbjct 81863 CACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAACAGATCGGGGATC 81807 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | || |||| | ||| | || | || || | |||||| ||||| || || Sbjct 81806 CACAGGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGA 81747 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || |||||||| || || | || ||||| || || || || ||| ||| Sbjct 81746 TCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGT 81687 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| || ||||| || || || |||||||| || |||||||||| ||||||||| Sbjct 81686 CGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGA 81627 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || | ||||||||| ||||| ||||| ||| Sbjct 81626 ATGACACCATTGGAGGTGCCGTTGGTACCG 81597 >seq151 Length=1813609 Score = 132 bits (146), Expect = 1e-25 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || |||||| | || ||||||||| ||||||||||||||| | Sbjct 1086108 TTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCAT 1086167 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| |||||||| |||| || ||||| ||||| ||||||||||| | Sbjct 1086168 CTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTT 1086227 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || ||||| || ||||||||| | | ||||| || || || |||| Sbjct 1086228 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACG 1086287 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCT 133672 | || ||||| | || |||| || |||||||| || ||| | | || |||||| Sbjct 1086288 AGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCT 1086343 >seq85 Length=3693789 Score = 122 bits (134), Expect = 3e-22 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| || |||||| || || || || || ||||| || ||||| | ||| Sbjct 322851 CGACGCTGAATGTATCCAGTTTCAGCAGTCTTGACTGCGGTATCGATCAGACCTTCTCGA 322792 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | |||| || || || | || | || |||| Sbjct 322791 CCAGCCATGGCGTGGAAGAAGAACTCTGAGGGGGTGAGGCCACGAAGGTAAGAATTCTCG 322732 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 || |||||||| |||||||| || | |||| ||||||||||| || || || | | | Sbjct 322731 ACAAAACCACGAGCCTCGGGAGAGTAGTCGTCTTTGGTAAAGTGAGGAAGAGTGCGATAC 322672 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATCA 302830 | | ||| | || || ||||| || ||||| | ||||| |||| || || | ||| Sbjct 322671 TTGAAACCGAAGGGAATGCGCTTGCCCTCAACAATTTGCTGACCCA--CAAGAGCAGTCA 322614 Query 302831 TCTGCGAAATATT 302843 |||||||||| || Sbjct 322613 TCTGCGAAATGTT 322601 Score = 87.8 bits (96), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | || ||||| | | ||||| ||||||||||||||||||||| | | |||| Sbjct 693284 GAAGCTGCGAGGCACCATAGGCAATCAGACAATCACGCTCCATTTCACCCAGTCTCAGAC 693225 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 ||||||| |||| | |||||||| || || || || | | | ||||||| | Sbjct 693224 CACCATCTCGAGAACGACCCTCGGTGGGTTGGCGCGTCAAGATGGCTCGAGGACCGCGTG 693165 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | || || ||| || | ||||| ||||||||||| ||||| | ||| ||| Sbjct 693164 ATCGAGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGTTGGTAATAGATGGGTCCGT 693105 Query 251654 TGAAGATG 251661 |||||||| Sbjct 693104 TGAAGATG 693097 >seq79 Length=919795 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| ||| ||||||||||| | || | | || Sbjct 45541 ATGAGTCCACAAATCTCGCAGACGTGGACTCTGAAAGCATCAGATACTTCGAACAAGCGC 45600 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | || || || | |||||| |||||||| |||||||| ||||| Sbjct 45601 TCCTTCAAGAAGGCTGCGGCTCCATGGGCAATCATGCAATCACGTTCCATTTCTCCGAAC 45660 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || |||||||| || | ||| | |||||| ||||||| || || Sbjct 45661 CGCAGACCACCGTCTCTAGCACGACCCTCCACAGGCTGCCGTGT 45704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814356481964