Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq84 136 6e-26 seq151 125 1e-22 seq2 98.7 2e-14 >seq84 Length=778094 Score = 136 bits (150), Expect = 6e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| |||||| | || ||||||||||| |||||| | | Sbjct 405587 CCAACTACCTCGACATCAAGCCCCTTCTCGATGTTGGTTGCAAGACCGTCGCCAACATGA 405528 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| ||||| ||||| || ||||||| Sbjct 405527 TCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACGTTCAACATCA 405483 >seq151 Length=1813609 Score = 125 bits (138), Expect = 1e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| | || ||||| |||||| Sbjct 1086615 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 1086556 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| |||||||| | | ||| ||||||| || || | | |||| || ||| Sbjct 1086555 AAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACAAGAAGACGG 1086496 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC--GATGAGCGCCA 794085 ||||| || || || ||||| || ||||||| | | ||||||||| || |||||| | Sbjct 1086495 TCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCAA 1086436 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | |||| | | ||||| | |||||| | ||| || ||| ||||||||| Sbjct 1086435 --GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCT 1086381 >seq2 Length=1753382 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 2019198 CCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCC 2019257 || || || || || ||| ||||||||||||| || |||||| || | || || | || Sbjct 674580 CCCCCGGGGCGACAAAAGTTGATCATCCTCGACGAAGCCGACAGCATGACATCTGGCGCG 674521 Query 2019258 CAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCC 2019317 ||||| ||||||||| ||| ||||||| || |||| || || | || || | ||| Sbjct 674520 CAGCAAGCCCTCCGACGGACGATGGAAATTTATTCCAATACCACCAGATTCGCATTCGCC 674461 Query 2019318 TGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTT 2019377 |||||| ||| | ||||||| || | || | ||||||||| |||| | | Sbjct 674460 TGCAACCAGTCCAACAAAATCATCGAGCCCTTACAATCGAGATGCGCCATCCTGCGATAT 674401 Query 2019378 GCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAG 2019437 || || ||||||||||| | | ||| ||| |||| ||||| || |||||| Sbjct 674400 GCAAAGCTGACCGACGCCCAAGTGGTGAAGCGGTTGCTTCAGATCATCGAAGCGGAAAAG 674341 Query 2019438 GT 2019439 || Sbjct 674340 GT 674339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916228103575508