Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq96 116 2e-21 seq85 111 1e-19 >seq1 Length=4044527 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| |||||||||||||| ||||| ||||| ||| | || |||| Sbjct 542155 AGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCT 542214 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| |||||||| | || | ||||||||||| Sbjct 542215 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 542274 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 542275 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 542334 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 542335 TTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 542366 >seq96 Length=3495428 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| ||||| || | | | || |||| Sbjct 1450229 AGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 1450170 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||| ||||| ||||||||| | || | |||||||| || Sbjct 1450169 TCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCC 1450110 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| || | ||| || |||| ||| || ||| Sbjct 1450109 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 1450050 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||| ||||| Sbjct 1450049 TTACCGGTCAAGGTCTTGACAAAGATTTGCAT 1450018 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| ||| ||||||||||||||| || || ||| |||| |||| Sbjct 1450457 AGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCC 1450398 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || || || ||||| ||||||||| | || | ||||||||||| Sbjct 1450397 TCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1450338 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| | ||||| || | || || Sbjct 1450337 TGAATCTTCGACTTGAC--AT--TGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAAT 1450282 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| || || |||||||| Sbjct 1450281 CGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 1449717 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1449658 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || ||||| || | || | ||||||||||| Sbjct 1449657 TCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 1449598 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || |||||| |||| || |||||| Sbjct 1449597 TGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTC 1449538 Query 34946 TTTCCCGT 34953 |||||||| Sbjct 1449537 TTTCCCGT 1449530 >seq85 Length=3693789 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| || || |||||||||||||||| Sbjct 3530915 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 3530974 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| ||||| || | || | |||||||| || | || || ||||| Sbjct 3530975 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 3531034 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || |||||| |||| ||| |||||||| |||||||||||||| || | Sbjct 3531035 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 3531094 Query 34968 A 34968 | Sbjct 3531095 A 3531095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692117266468