Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq97 134 2e-25 seq151 113 6e-19 >seq97 Length=371559 Score = 134 bits (148), Expect = 2e-25 Identities = 270/395 (68%), Gaps = 19/395 (5%) Strand=Plus/Plus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 || ||||| || ||| | ||| ||||||||||||| | ||| | |||| | | |||| Sbjct 81298 GTTGAGCGACCTCAGCACATGATCATGCGTGTCGCTGTCGGCA--TCTGGGGT-GACGAC 81354 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTT 259911 |||| || |||||| |||||| | |||||| ||||| | |||| Sbjct 81355 ATCGAGCGTGTCCTGGAG------------ACCTACAACCTCATGTC-CAGCAAGCTGTT 81401 Query 259912 CACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGT 259970 ||| ||| || | || || || || ||||| || || || | || ||| || || | Sbjct 81402 CAC-TCACGCTTCACCAACCCTGTTCAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCT 81460 Query 259971 GCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGT 260030 |||| ||| | |||||||||| || ||||| || ||||| ||||| |||||| | Sbjct 81461 GCTTCCTGGTTGACATGAAGGAAGACAGCATCGACGGTATCTACGACACCCTCAAGACTT 81520 Query 260031 GCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCG 260090 | || | ||||||||| ||| || ||||||||| | || ||| | || ||| Sbjct 81521 GTGCCATGATCTCCAAGATGGCAGGAGGCATCGGTCTCAACGTGCACCGAATCCGTGCCA 81580 Query 260091 CGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCG 260150 | ||| | ||| | || || ||||||||| ||||| || | | || ||||| || | Sbjct 81581 CCGGCTCTTACATTGCCGGTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTG 81640 Query 260151 TTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || ||| |||| || || |||||||||||| || Sbjct 81641 TCTTCAACAACACTGCTCGATACGTCGACCAGGGC 81675 Score = 86.0 bits (94), Expect = 9e-11 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| | | ||| || | ||| ||||||| || | |||| ||||||||||| Sbjct 81976 TGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAACCCTTTCATGCTCTACAAGGAC 82035 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 | ||||| | ||||||||| ||||||||||||||| || ||| ||||||| | Sbjct 82036 AGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACCATTCG-CAG-TTCCAACCTTT 82093 Query 262215 GCACCGAGATCGTCCAGT 262232 |||| |||||| || ||| Sbjct 82094 GCACTGAGATCATCGAGT 82111 >seq151 Length=1813609 Score = 113 bits (124), Expect = 6e-19 Identities = 210/303 (69%), Gaps = 13/303 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||| ||||| |||||||| | || | Sbjct 1085719 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATC 1085777 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| |||| |||||||| || Sbjct 1085778 TGTCCAAGGATCAACACG----ACTGGAACAATCGTCTGACTTCCGACGAGCAGTTCTTT 1085833 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| |||| ||||| ||| |||||| ||||||||||| || ||| ||| Sbjct 1085834 ATCTCTCACATCCTTGCCTTCTTT-GCCGCCTCTGATGGCATCGTCAATGAAAACTTGGT 1085892 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | |||||||| | || ||||| || | || || || || || || Sbjct 1085893 TGAGCGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAAT 1085952 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || ||||||||||||||||| |||||||| | || || || |||||| ||||||| Sbjct 1085953 CATGATGGAAAACATCCACTCTGAGACCTACTCATTGCTCATTGATACCTACATCAAGGA 1086012 Query 1456068 CCC 1456070 || Sbjct 1086013 GCC 1086015 Score = 102 bits (112), Expect = 1e-15 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || ||| | |||||| | ||||| | | |||| | ||||| | | Sbjct 1086381 AGATCATCACCGACGCTGTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCC--TTG 1086438 Query 1456581 CGCTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGAC 1456638 ||||| || ||||||||| | | |||||| || ||||| || ||| || |||||| Sbjct 1086439 CGCTCTTCTGGGCATGAACTCGGAC-CTCATGAAGCAATACATCGAGTTT-GTTGCCGAC 1086496 Query 1456639 CGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATG 1456698 || || || | ||| || ||| || ||||| ||| | | |||||||| ||| | Sbjct 1086497 CGTCTTCTTGTGGCACTTGGCAACG-AGAAGATTTACAAGTCTGCCAACCCCTTCGACTT 1086555 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| ||||| || | |||||||||||||| |||||| Sbjct 1086556 CATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAG 1086598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177794610283864