Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq96 131 2e-25 seq97 107 2e-18 seq1 96.9 4e-15 >seq96 Length=3495428 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||| || | Sbjct 1450472 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 1450413 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| || || |||||||| | |||||||| || || || Sbjct 1450412 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 1450353 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| ||| | || || || ||||| || Sbjct 1450352 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 1450293 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || || ||||| | || || |||||||| ||||| Sbjct 1450292 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || ||||| ||||| || |||||||||||| Sbjct 1449732 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1449673 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || || | ||||||||||| || || Sbjct 1449672 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 1449613 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||| || || || || Sbjct 1449612 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 1449553 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || || || Sbjct 1449552 TCAAGAGTGATGGTCTTTCCCGT 1449530 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || ||||| || || || ||||| || |||||||||||| | ||| | Sbjct 1450235 AGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGG 1450176 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | |||||||| || || || || || || Sbjct 1450175 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCC 1450116 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | |||||||| || ||||| || || || Sbjct 1450115 TTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTG 1450056 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || || || |||||||| Sbjct 1450055 ATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 1450018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || ||||||||||| |||||||||||| | ||| | || || Sbjct 1449998 ACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 1449939 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| ||||| || ||||| || || || || || || || Sbjct 1449938 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGG 1449879 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || || || || || || ||||| || ||||| || Sbjct 1449878 ATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 1449819 Query 134685 CCGGTTAAAGTTTTAACGA 134703 || || | || || |||| Sbjct 1449818 CCAGTGAGGGTCTTGACGA 1449800 >seq97 Length=371559 Score = 107 bits (118), Expect = 2e-18 Identities = 542/857 (63%), Gaps = 15/857 (2%) Strand=Plus/Plus Query 7555 GAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGAC 7614 || ||| ||| |||||| | |||| || || || ||||| || || ||||| || Sbjct 81301 GAGCGACCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAG 81360 Query 7615 GCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACC 7674 | | |||| || ||| | | ||||| || | ||| || |||||||| || ||| Sbjct 81361 CGTGTCCTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTCACTCACGCTTCACCAACC 81420 Query 7675 ATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGC 7734 |||| ||||| || |||||| |||| || || || || | |||| Sbjct 81421 CTGTTCAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAG 81480 Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATA 7793 ||||||||||||||||| || ||| |||| || | || ||| |||| || ||| || | Sbjct 81481 GAAGACAGCATCGACGGTATCTACGACACCCT-CAAGACTTGTGCCATGATCTCC-AAGA 81538 Query 7794 CGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGT 7852 ||| || || || ||||| ||||| || | || |||| ||| ||| | Sbjct 81539 TGGCAGGAGGCATCGGTCTCAACGTGCACCGAATCCGTGCCACCGGCTCTTACATTGCCG 81598 Query 7853 CCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGC 7912 |||||||| | ||| ||| | || ||| | || || ||||| ||| | | | Sbjct 81599 GTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTC 81658 Query 7913 GACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGT 7969 || | || |||||||| || ||||| || || ||||| || | ||||| | Sbjct 81659 GATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCT 81718 Query 7970 GGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA 8029 ||||||| ||| ||| | | | | ||||||| ||| || ||||| | Sbjct 81719 GGCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCC 81778 Query 8030 AAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATT 8089 || || || | ||||| | ||||| | ||||||||||| |||| ||| || | Sbjct 81779 GCGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGA 81838 Query 8090 TCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACG 8149 ||| | ||| | |||||||||||| || ||||| | | |||| Sbjct 81839 AGAACGGCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACG 81898 Query 8150 GTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG 8209 || | || || | ||||| | | || || || ||| | | | ||||| Sbjct 81899 GTGATGAGTTCGAGAAGCTGTACGAGAAGTATGAGCA----GGCTGGCAAAGGTCGCAAG 81954 Query 8210 ----TGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATG 8265 |||| || | | ||| ||||| | || ||| | ||||||||| | Sbjct 81955 ACCATGAAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAAC 82014 Query 8266 CCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACC 8325 || | |||||| ||||| ||| |||||| |||||||| || | ||| |||||||| Sbjct 82015 CCTTTCATGCTCTACAAGGACAGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACC 82074 Query 8326 ATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCC 8385 ||| | | ||| || ||| |||| || | ||||| | || ||||| || || || Sbjct 82075 ATTCGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGTGCTCCCGATGAGGTCGCT 82134 Query 8386 GTTTGCAATCTAGCGTC 8402 ||||||||||| || || Sbjct 82135 GTTTGCAATCTCGCATC 82151 >seq1 Length=4044527 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||| ||||| || ||||||||||||| Sbjct 542140 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 542199 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || || | |||||||| || || || Sbjct 542200 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 542259 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 542260 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 542319 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || || || | || || ||||| || ||||| ||| Sbjct 542320 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 542370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397313393440