Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq97 140 4e-28 seq151 102 1e-16 >seq97 Length=371559 Score = 140 bits (154), Expect = 4e-28 Identities = 447/689 (65%), Gaps = 12/689 (2%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| ||||| || | |||| | | || || || ||||| || ||||| | | | Sbjct 81911 TCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTC 81852 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | | | | || || || ||||| || |||||||| ||||| || || | || Sbjct 81851 CAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAAC 81792 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | || | | | |||||| || || || || ||||| | || || | | Sbjct 81791 AAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAA 81732 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | || | ||||| || || || || || || | | || ||||| || || || ||| Sbjct 81731 ACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC 81672 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | ||||| |||||||| || |||| | ||||| ||||| | |||||| || Sbjct 81671 TGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAG 81612 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACC 69875 | || || || || | ||| ||| || | || || || | | | | ||||| Sbjct 81611 GTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGCACGTTGAGACC 81553 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || ||||||||||| || ||||| | |||||| || | ||||| || ||||| || Sbjct 81552 GATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTC 81493 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||||| || || |||||| || || || ||| ||||| ||| | || || || Sbjct 81492 GATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACC 81433 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 |||||| || | || || || |||||||||||| || || | || ||||| || Sbjct 81432 CGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGT 81373 Query 70056 TTCAATAGCTGATTCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 || | | || || || || | |||| || | ||||||||||| | || Sbjct 81372 CTCCAGGACACGCTCGATGTCGTCACCCCAGATG----CCGACAGCGACACGCATGATCA 81317 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | ||||||||||| || || | || || || |||| ||||| ||| || |||| Sbjct 81316 TGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAG 81257 Query 70172 TTTTAAACCCAAAATAGTTGTA--TGAAA 70198 | || || || || || | ||| ||||| Sbjct 81256 TCTTGAAGCCGAAGTATTGGTAGTTGAAA 81228 >seq151 Length=1813609 Score = 102 bits (112), Expect = 1e-16 Identities = 293/447 (66%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| |||||||| || |||||||| || || || ||||| | | || || || Sbjct 1086621 TTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTC 1086562 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || | | || || | || | || | | | || Sbjct 1086561 TCCATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACAAGA 1086502 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT--GA 39503 | | || |||||||| || |||||| ||||| | || | ||||| || | || Sbjct 1086501 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 1086442 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || || ||||| || || ||||| | ||||||| || || || || || | Sbjct 1086441 GCGCAA--GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGA 1086384 Query 39564 TCG-----ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618 || ||| | || | | | |||||| | | | | || || | || Sbjct 1086383 TCTCACGAATGAT-CTGCTTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGG----AGACA 1086329 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||||||||| || ||||||||||| | | ||| | ||||| || ||||| | || Sbjct 1086328 GGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCC 1086269 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 |||||| ||||||||||| |||||||| || |||| || |||| ||| ||||| || Sbjct 1086268 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAAT 1086209 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAG 39765 || || || || || || ||||| || Sbjct 1086208 ACCCTCAACGGCAGCGAAAGCAACCAG 1086182 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || ||||||||||| ||| || ||||| || || || |||| || |||| || Sbjct 1085976 TCAGAGTGGATGTTTTCCATCATGATTTGAAAACCATAGAAGCATCGAGCCTCAGGGATC 1085917 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | |||| || |||| |||||||| || || |||||| |||||| Sbjct 1085916 TGGACCTCGCCGCTGAATCGCTCAACCAAGTTTTCATTGACGATGCCATCAGAGGCGGCA 1085857 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAG 40090 || || || | | || ||||| | | || |||| |||| || |||||| Sbjct 1085856 AAGAAGGCAAGGATGTGAGAGATAAAGAACTGCTCGTCGGAAGTCAGACGATTGTTCCAG 1085797 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||| || || | ||| | ||| || || ||||| || || ||||| ||||| Sbjct 1085796 TCGTGTTGATCCTTGGACAGATCAATTTCCTCGGCAGTCCAGAAGGAGGCCTCGGCCTTC 1085737 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 1085736 TTGTACATTTGCCAGAT 1085720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907323146080