Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq85 187 8e-42
seq96 156 1e-32
seq1 105 2e-17
>seq85
Length=3693789
Score = 187 bits (206), Expect = 8e-42
Identities = 526/803 (66%), Gaps = 6/803 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || ||||| ||||| | ||| ||| || | ||||| || || |
Sbjct 713797 CCCGAGGAGATCTCATCCATGGTCCTCACTAAGATGCGTGAGACCGCTGAGGCCTACCTC 713856
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
||||| || || | | ||||| | ||||| || ||||| || || ||| ||||||
Sbjct 713857 GGTGAGACCGTTAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATAGCCAGCGC 713916
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || |||||| || | || || || |||| || || ||
Sbjct 713917 CAGGCTACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGAATCATCAACGAG 713976
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||||||||| || ||||| || || || || || | || ||| ||| || |
Sbjct 713977 CCCACTGCTGCCGCCATTGCCTACGGTCTCGACAAGAAGATTGAGGGTGAACGCAACGTC 714036
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| || || ||| | ||||||||||| || ||||| || || || || | || |||||
Sbjct 714037 CTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTTTCTCTCCTCACCATCGAGGAGGGT 714096
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || ||||||||||||| || || || ||||| || || || || ||
Sbjct 714097 ATCTTCGAGGTCAAGTCAACTGCTGGTGACACTCACCTGGGTGGCGAGGACTTCGACAAC 714156
Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950
||||||||| || |||||||| ||||| || | |||| ||||| | ||| |||
Sbjct 714157 CGTCTCGTTAACCACTTTGTTAATGAATTCAAAAG-AAAGCATAAAA--AAGATTTGAGC 714213
Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008
| ||| | | || | || || || | ||||| || || ||||| ||||| | |
Sbjct 714214 TCCAATGTTCGCGCGCTTCGACGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACTCTT 714273
Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068
|| || | | || |||||||| || || || ||||| || || | || ||||
Sbjct 714274 TCCTCCTCCGCGCAGACCTCTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTAC 714333
Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128
| || || || || ||||| || || || | || |||||| || || | || ||
Sbjct 714334 ACCTCCATCACCCGAGCTCGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACTATC 714393
Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188
| || || || || | || || ||||| || | | | | || |
Sbjct 714394 CAGCCCGTCGACCGTGTCCTCGCCGACGCGAAAATCGATAAGAGCCTCGTCCACGAGATC 714453
Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248
|| | || ||||| || || ||||| || || || || | | | || | ||
Sbjct 714454 GTCCTCGTCGGTGGCTCCACCCGTATCCCCCGTGTCCAGAAGCTCATTACCGACTACTTC 714513
Query 350249 AATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCT 350308
|| ||||| || || | || || || || ||||| |||||||| || ||||| ||
Sbjct 714514 AACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCC 714573
Query 350309 GTTCAGGCATCTATTTTATCTGG 350331
|||||||| | ||| | |||||
Sbjct 714574 GTTCAGGCCGCCATTCTGTCTGG 714596
>seq96
Length=3495428
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | || |||||||| |||||||| ||||| || || || || || ||
Sbjct 1450248 CATACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTC 1450189
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || || || ||||| ||||| || ||||| || ||||| || || ||||| || ||
Sbjct 1450188 GGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGG 1450129
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| || | || ||||| || |||| || |||| ||
Sbjct 1450128 GGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTC 1450069
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| ||||| | || || ||||| || |||||
Sbjct 1450068 CACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 1450018
Score = 134 bits (148), Expect = 4e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | ||||| || ||||| || ||||| || ||||| || ||
Sbjct 1450479 TTACTGACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTA 1450420
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|||| | || || ||||| || || || || |||||||| || || || ||||| ||
Sbjct 1450419 ATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTC 1450360
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|| || || || || || || ||||| || | || ||||| || || | |||||| |
Sbjct 1450359 TGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGA 1450300
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || |||| ||||| ||||| || || || || |||||||||||
Sbjct 1450299 TTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246
Score = 109 bits (120), Expect = 2e-18
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || || || ||||| ||||| || ||||| || || |
Sbjct 1450024 TTTGCATACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 1449965
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||||| ||||| ||||| || || ||||||||||| || || || || |
Sbjct 1449964 AGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 1449905
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || ||||| || || | || ||||| || || | ||| || |
Sbjct 1449904 CGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAG 1449845
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || || | ||||| || || || || || ||
Sbjct 1449844 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1449802
>seq1
Length=4044527
Score = 105 bits (116), Expect = 2e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || |||||||| ||| || || || || || ||
Sbjct 542139 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 542198
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||||| ||||||||||| || || || || ||||| || || ||||| || || ||
Sbjct 542199 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 542258
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|||||| || || ||||| || || | || || || || || | || || | || ||
Sbjct 542259 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 542318
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || || ||||||||
Sbjct 542319 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 542366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515251060758116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |