Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq97 329 4e-85 seq96 176 5e-39 seq1 143 3e-29 seq85 114 1e-20 seq129 111 2e-19 >seq97 Length=371559 Score = 329 bits (364), Expect = 4e-85 Identities = 1130/1741 (65%), Gaps = 43/1741 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| || ||||||||| | |||||| Sbjct 83033 GTGCGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTG 82974 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | |||||||| | |||| |||||| || |||||||||||| |||| Sbjct 82973 GTGATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATG 82914 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCATACTGT 80216 || || |||||||| || | ||||| | | || | || | | ||| ||||| || || Sbjct 82913 AAGGCACCACGATCGGCGGACATTTGGAGGACCTGGCGTTGG-GAAATCTCCCACACCGT 82855 Query 80217 ACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTT 80276 || | | || || || ||||||| | | | | | ||||| || Sbjct 82854 CTTGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTC 82795 Query 80277 TACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333 ||| | || |||| || || ||| | || | | ||| || |||| Sbjct 82794 AGAAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTTCAA 82735 Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393 || ||||| | ||||| || || ||| || ||| | || | ||| | Sbjct 82734 GAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGA 82675 Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 || |||||||| || ||||| || || |||||||| | || || || || ||||| Sbjct 82674 GGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCAT 82615 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGA 80513 ||| ||| | || || || | ||||||| ||| | | |||||| || | Sbjct 82614 AGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCG-AAGGGTCT 82556 Query 80514 CCAAAAATCAAC---CCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568 || | ||| | | ||| | || |||||| || ||| | ||| ||||| Sbjct 82555 CCCAGTCCCAAAGGTCGGAGGGCT-TCACGTTCCACATATCAAACTGGAGGATACCCTCA 82497 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGA 80627 || || || || ||| ||| | ||| || |||||| ||| || || | ||| ||| Sbjct 82496 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCAC-CGA 82438 Query 80628 CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTG 80687 || | | || ||||| |||||| |||||||| |||||||| | || |||| Sbjct 82437 GGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTC 82378 Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 ||| ||||| | || || | || ||| | ||||| || ||||| || |||| Sbjct 82377 GGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAC 82318 Query 80748 GGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806 | || || ||||| ||| |||| | | || |||||| || ||||| ||| Sbjct 82317 ACCAATGGGTCGGTGACGCATGTTGCTGTTGCG-GGCCTCGATGATGGGGTAGTGGTTGA 82259 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAA 80866 ||||| | ||||| |||||| |||||| |||| || || || || ||||| | Sbjct 82258 CGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGA 82199 Query 80867 AGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGC 80920 ||||| | | | | || ||||| | || || || || || ||||||| Sbjct 82198 AGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGATGCGAGATTGC 82139 Query 80921 ACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAG 80977 | || || ||||| || |||| | ||| ||||| ||| || ||||| | || ||| Sbjct 82138 AAACAGCGACCTCATCGGGAGCA-CAGTA--CTCGATGATCTCAGTGCAAAGGTTGGAAC 82082 Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 ||| || |||||||| |||||||| || |||||| |||||||||| || Sbjct 82081 TGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCA 82022 Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 || | ||| | ||||| ||| ||| | || | |||||| | ||| | || | |||| Sbjct 82021 TGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTGGGCCT 81962 Query 81098 TGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTG 81156 | | |||||| |||||| | | ||||||| |||| |||||| ||||||| Sbjct 81961 TCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTC-TCGAACTCA 81903 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 |||||| |||| || | |||||||| || |||||||| || ||||||| | Sbjct 81902 TCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCG 81843 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | ||||| ||| ||||||||| || |||||||| ||||| ||||| ||| || Sbjct 81842 TTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGA 81783 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| || || || | || ||||| ||||| || | || || | | ||| || Sbjct 81782 GCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCG 81723 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTG 81390 ||||| ||||| || || | ||||| | || | | || ||| ||||||| | Sbjct 81722 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACC---GGGTCGCTTGTTGCCGCCCTGGTCG 81666 Query 81391 ACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCG 81450 ||||| || ||||| ||| || ||||| | |||||| |||| ||||| || ||| Sbjct 81665 ACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCG 81606 Query 81451 TTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGC 81508 || ||||| | || || || |||| || | | ||| |||| ||||||||| Sbjct 81605 TTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGC 81548 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | |||| | ||| || ||| ||||| || | ||| || || || || ||||||| Sbjct 81547 CTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGC 81488 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 | |||| |||||||||| || ||| ||| |||| |||||| | || |||| Sbjct 81487 TGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCAT 81428 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCT 81688 ||||||| ||||| | |||||| |||| | | ||||| |||| ||||| ||| Sbjct 81427 TGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCA 81368 Query 81689 TGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGG 81748 ||| || || |||||||| || |||| ||| |||||||| | ||||| ||| | Sbjct 81367 GGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGAG 81308 Query 81749 G 81749 | Sbjct 81307 G 81307 >seq96 Length=3495428 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || || ||||| ||||| |||| ||| | Sbjct 1449802 GTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGAC 1449861 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || |||||||||||||| || || || ||||| ||||| || || Sbjct 1449862 AATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATC 1449921 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| | ||||| || ||||||||||| Sbjct 1449922 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 1449981 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || ||| | |||||||||||||| Sbjct 1449982 TCTACCCTTCACCTCGTCCTCCGTCTTCGCGGTGG 1450016 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| |||||||| || |||||||| |||||| Sbjct 1450018 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 1450077 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || |||||||| |||||||| || || ||||||||| Sbjct 1450078 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 1450137 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||||| |||||| | | ||||| || Sbjct 1450138 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 1450197 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || || | || ||||| ||||| Sbjct 1450198 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGG 1450244 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 1450246 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 1450305 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 1450306 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 1450365 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||||||||| || ||||||| ||| ||||| || || || Sbjct 1450366 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 1450425 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || ||||| || || | ||||| || || || || Sbjct 1450426 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGTCA 1450475 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||||||||||| ||||| || | ||| | || | ||| | Sbjct 1449530 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 1449589 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| || |||||||| || || || ||||| ||| Sbjct 1449590 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 1449649 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| ||||| || || Sbjct 1449650 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 1449709 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || || || Sbjct 1449710 CTCGTCCTCCGCCTCCGTGGAGG 1449732 >seq1 Length=4044527 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 542366 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 542307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||||||||| || |||||| Sbjct 542306 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 542247 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || ||||| || || |||| || ||||| ||| ||||| || Sbjct 542246 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGC-GACTACAA 542188 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||| || || | || || || ||||| Sbjct 542187 CATCCAGAAGGAGAGCACTCTTCACCTGGTGCTCCGCCTCCGTGGTGG 542140 >seq85 Length=3693789 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | |||| Sbjct 3531095 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 3531036 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || ||||| |||||||||||||| || || |||||||| | Sbjct 3531035 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 3530976 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 3530975 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 3530916 Query 27595 G 27595 | Sbjct 3530915 G 3530915 >seq129 Length=2409468 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGC 32060 ||||||||||| || || |||||| |||||| ||| | ||| || || | |||||||| Sbjct 1610817 CAGCGCAAGGTCATGTATGCCTGCTTCAAGAGAAACATCGTCAAG-GATAAGAAGGTGGT 1610759 Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120 | || | || || || | || |||||| | || ||||| || || || || || || Sbjct 1610758 TGAACTAGCTGGTTATGTTTCCGAACAAACGTCATACCACCATGGTGAAGCTTCTCTTCA 1610699 Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 | ||||| | | | || |||||||| ||||| |||| ||| | |||| ||||| Sbjct 1610698 GCAAACCATCATTGGCTTGGCCCAGAACTTCGTCGGCTCAAACAACATCAACTGTCTCGA 1610639 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 |||| ||| | || || | || || ||||| ||| ||||||||||| | ||||| Sbjct 1610638 GCCAAGCGGAAACTTCGGCTCTCGACTTGCCGGCGGCTCAGATGCTGCGAGTCCTCGTTA 1610579 Query 32241 CATCTTCACCCGTCT 32255 || || || || || Sbjct 1610578 CACTTTTACTCGCCT 1610564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309173832640