Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1 178 3e-39
seq96 154 3e-32
seq85 134 3e-26
seq151 113 9e-20
seq118 96.9 7e-15
seq121 84.2 5e-11
>seq1
Length=4044527
Score = 178 bits (196), Expect = 3e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | ||||| || || ||||||||||||||
Sbjct 542139 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 542198
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || |||||||| || || || || ||||| ||||| | || || ||||| ||
Sbjct 542199 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 542258
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||||||||| |||| || ||
Sbjct 542259 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 542318
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 542319 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 542369
>seq96
Length=3495428
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || ||| ||||||||||||||||| |
Sbjct 1450017 ACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 1449958
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || || |||||||||| || |||||||| ||
Sbjct 1449957 GAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGG 1449898
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| || ||||||| |||||
Sbjct 1449897 GATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGAC 1449838
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||||| ||||| ||||| || || | ||||| ||||
Sbjct 1449837 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1449800
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || ||||| || | || || || || |||||||| |||
Sbjct 1450473 ACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACT 1450414
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || ||||| || | || || ||||| ||
Sbjct 1450413 CAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGG 1450354
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||| ||||| | || || | |||||||| || |||| ||||||
Sbjct 1450353 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGAC 1450294
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||||| |||||||| || || | ||||| ||||| ||||||||
Sbjct 1450293 CTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246
Score = 138 bits (152), Expect = 2e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| ||||| || || || || | ||| || || |||||||||||||| |
Sbjct 1449733 ACCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1449674
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || ||||| | || || || || ||
Sbjct 1449673 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGG 1449614
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| |||||||| | |||||
Sbjct 1449613 GATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGAC 1449554
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| |||||||| ||||| |||||||
Sbjct 1449553 CTCAAGAGTGATGGTCTTTCCCGTCA 1449528
Score = 136 bits (150), Expect = 8e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || || || || || || | || || || |||||||||||||| |
Sbjct 1450245 ACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 1450186
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| || || || ||||| ||||| | || || ||||| |
Sbjct 1450185 CAAG-GTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGG 1450127
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| ||||||||||| || || ||||| | || || | ||||| ||||| || | || |
Sbjct 1450126 GGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCA 1450067
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| |||||||| ||||| ||||| || || || |||||
Sbjct 1450066 CCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 1450018
>seq85
Length=3693789
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||||||||| || || || ||||| ||||||
Sbjct 3530917 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 3530976
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || || || ||||| |||||||| || |||||||| | || || | ||
Sbjct 3530977 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 3531036
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || || ||||| ||||| ||||| | ||||| |||||
Sbjct 3531037 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 3531095
>seq151
Length=1813609
Score = 113 bits (124), Expect = 9e-20
Identities = 154/214 (72%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | ||| || | |||||| |||| | |||||||| | || ||||||
Sbjct 1086411 AGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGA 1086470
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
|||||| ||||| || || || || ||| || | ||||| || || ||||||| | |
Sbjct 1086471 AGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTT 1086530
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| || || |||||||||| || |||||| ||| || || || || || ||||
Sbjct 1086531 ACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 1086590
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403
||||||| |||||||| | ||||| || |||||
Sbjct 1086591 TCTTCGAGAAGCGTGTTGGTGATTACCAGAAGGC 1086624
Score = 84.2 bits (92), Expect = 5e-11
Identities = 109/146 (75%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997
|||||| | |||| ||||||| | |||||||||| | || | |||| | || | |||
Sbjct 669650 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 669708
Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055
||| | ||||| | || || |||||||| | ||||| || | |||| |||||
Sbjct 669709 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 669767
Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081
||||||||||||||||||||| ||||
Sbjct 669768 TGGGCAATCCGCAGCCAAGCCCCTAA 669793
>seq118
Length=2933755
Score = 96.9 bits (106), Expect = 7e-15
Identities = 125/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726
|| ||||| |||| ||||| || |||| | | |||||||||| || || || |
Sbjct 863147 ACACCACCCTCGAACTTCTTGAGGGCCTTGGAAAGGGCACCGAGAGAGTCACGATCGAGG 863206
Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785
||||||| ||||| ||||||||||||| |||||| | ||||| ||||| |||| | |
Sbjct 863207 TAGTTGGTGGGCTCGTCAAGAACGATGAGATGGGGTCGCTGCCA-AGAGCAGGCGGCAAG 863265
Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835
|| ||| | || ||||||||||| ||||| |||||||| ||||
Sbjct 863266 GACAGTCTTGACACGCTGGCCACCAGACAGACCACGCATGCGAGAGTGAG 863315
>seq121
Length=11592
Score = 84.2 bits (92), Expect = 5e-11
Identities = 109/146 (75%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997
|||||| | |||| ||||||| | |||||||||| | || | |||| | || | |||
Sbjct 3313 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 3371
Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055
||| | ||||| | || || |||||||| | ||||| || | |||| |||||
Sbjct 3372 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 3430
Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081
||||||||||||||||||||| ||||
Sbjct 3431 TGGGCAATCCGCAGCCAAGCCCCTAA 3456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046736893248488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |