Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 178 3e-39 seq96 154 3e-32 seq85 134 3e-26 seq151 113 9e-20 seq118 96.9 7e-15 seq121 84.2 5e-11 >seq1 Length=4044527 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||||| || || |||||||||||||| Sbjct 542139 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 542198 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || ||||| ||||| | || || ||||| || Sbjct 542199 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 542258 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||||||||| |||| || || Sbjct 542259 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 542318 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 542319 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 542369 >seq96 Length=3495428 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || ||| ||||||||||||||||| | Sbjct 1450017 ACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 1449958 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||||| || |||||||| || Sbjct 1449957 GAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGG 1449898 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || ||||||| ||||| Sbjct 1449897 GATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGAC 1449838 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 1449837 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1449800 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || ||||| || | || || || || |||||||| ||| Sbjct 1450473 ACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACT 1450414 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || ||||| || | || || ||||| || Sbjct 1450413 CAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGG 1450354 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||| | || || | |||||||| || |||| |||||| Sbjct 1450353 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGAC 1450294 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| || || | ||||| ||||| |||||||| Sbjct 1450293 CTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 1449733 ACCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1449674 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||| | || || || || || Sbjct 1449673 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGG 1449614 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 1449613 GATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGAC 1449554 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || |||||||| ||||| ||||||| Sbjct 1449553 CTCAAGAGTGATGGTCTTTCCCGTCA 1449528 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 1450245 ACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 1450186 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| || || || ||||| ||||| | || || ||||| | Sbjct 1450185 CAAG-GTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGG 1450127 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | ||||||||||| || || ||||| | || || | ||||| ||||| || | || | Sbjct 1450126 GGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCA 1450067 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 1450066 CCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 1450018 >seq85 Length=3693789 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 3530917 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 3530976 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || ||||| |||||||| || |||||||| | || || | || Sbjct 3530977 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 3531036 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 3531037 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 3531095 >seq151 Length=1813609 Score = 113 bits (124), Expect = 9e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | ||| || | |||||| |||| | |||||||| | || |||||| Sbjct 1086411 AGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGA 1086470 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 |||||| ||||| || || || || ||| || | ||||| || || ||||||| | | Sbjct 1086471 AGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTT 1086530 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || || |||||||||| || |||||| ||| || || || || || |||| Sbjct 1086531 ACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 1086590 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||| |||||||| | ||||| || ||||| Sbjct 1086591 TCTTCGAGAAGCGTGTTGGTGATTACCAGAAGGC 1086624 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 669650 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 669708 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 669709 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 669767 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 669768 TGGGCAATCCGCAGCCAAGCCCCTAA 669793 >seq118 Length=2933755 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | | |||||||||| || || || | Sbjct 863147 ACACCACCCTCGAACTTCTTGAGGGCCTTGGAAAGGGCACCGAGAGAGTCACGATCGAGG 863206 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||||||||||| |||||| | ||||| ||||| |||| | | Sbjct 863207 TAGTTGGTGGGCTCGTCAAGAACGATGAGATGGGGTCGCTGCCA-AGAGCAGGCGGCAAG 863265 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||| | || ||||||||||| ||||| |||||||| |||| Sbjct 863266 GACAGTCTTGACACGCTGGCCACCAGACAGACCACGCATGCGAGAGTGAG 863315 >seq121 Length=11592 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 3313 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 3371 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 3372 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 3430 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 3431 TGGGCAATCCGCAGCCAAGCCCCTAA 3456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736893248488