Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01]
172 sequences; 44,950,817 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 161 9e-35
seq96 122 8e-23
seq85 102 8e-17
>seq1
Length=4044527
Score = 161 bits (178), Expect = 9e-35
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || || |||||||||||||| ||||| ||||||
Sbjct 542140 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 542199
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||||||||| || || ||||| ||||||| ||||
Sbjct 542200 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 542259
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||||| ||||||||
Sbjct 542260 ATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATAGTGTCGGAAGACTCCAC 542318
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || ||||| || ||||| || ||||| ||||| |||||||| ||
Sbjct 542319 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 542369
>seq96
Length=3495428
Score = 122 bits (134), Expect = 8e-23
Identities = 152/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||| ||||| |||||||||
Sbjct 1449732 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1449673
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| || ||||| || |||||||| || |||| ||
Sbjct 1449672 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 1449613
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| |||| | | | ||||| ||||| ||
Sbjct 1449612 ATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATGGTGTCCGAGGACTCGAC 1449554
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || |||||||
Sbjct 1449553 CTCAAGAGTGATGGTCTTTCCCGTCA 1449528
Score = 109 bits (120), Expect = 5e-19
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| || || || ||||||||||||||| || ||
Sbjct 1450472 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 1450413
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| || || || || || ||||| ||||| | |||
Sbjct 1450412 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 1450353
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||| | ||| | || | ||| || | || | ||| || || ||
Sbjct 1450352 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATTGTCG--ATAGTATCAGAAGATTCG 1450296
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || ||||| || || || || ||||| ||||||||||||||
Sbjct 1450295 ACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1450246
Score = 107 bits (118), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||||| || ||||| |||||||||
Sbjct 1450016 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1449957
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||| || || ||||||||||||||||| | |||
Sbjct 1449956 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 1449897
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || |||| || | | | || || ||||| ||
Sbjct 1449896 ATACCCTCCTTGTCCTGGATCTTCGACTTC-ACATTGTCGATGGTATCCGAAGACTCGAC 1449838
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 1449837 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1449800
Score = 105 bits (116), Expect = 6e-18
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||||| | ||| || | || || |||||||| ||||||||
Sbjct 1450209 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 1450150
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAA 41787
|| || ||||| ||||| | ||| | | |||||| ||| ||| | || | ||| ||
Sbjct 1450149 GATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCC-TGAATCTTCGACTTGACAT 1450091
Query 41788 CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847
| ||| |||||| ||||||||||| | || || || ||||| |||| |||||
Sbjct 1450090 TGTCGATC--GTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTT 1450033
Query 41848 TACGAAAATCTGCAT 41862
|| || || |||||
Sbjct 1450032 GACAAAGATTTGCAT 1450018
>seq85
Length=3693789
Score = 102 bits (112), Expect = 8e-17
Identities = 134/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||| ||||| | || || |||||||| |||||||| |
Sbjct 3530915 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 3530974
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| ||||| || |||| ||||| | |||||| ||| ||| || ||| || |
Sbjct 3530975 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTT-GACATTG 3531033
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || || || || ||||| || ||||| |||
Sbjct 3531034 TCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 3531093
Query 41852 AAA 41854
|||
Sbjct 3531094 AAA 3531096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303006046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |