Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24 156 5e-33 seq112 91.5 2e-13 >seq24 Length=306188 Score = 156 bits (172), Expect = 5e-33 Identities = 437/662 (66%), Gaps = 18/662 (3%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || |||| || ||||| | | ||| || |||| | || || || ||||| Sbjct 133670 CCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 133611 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || ||||| || ||||| || || | || | || | | | ||| || || || Sbjct 133610 AACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCG 133551 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||||| | ||| | | || || | ||||| || || | ||| ||| Sbjct 133550 TGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATG 133491 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||||| ||| ||||| || | Sbjct 133490 GCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 133431 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||||||||| | || ||||| |||| || || || Sbjct 133430 ACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCG 133371 Query 54281 CTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||| || | | |||| |||| || || |||||||| || ||||| | | Sbjct 133370 GTGGCACGGATTCGGTGCACGTTGA--GACCGATGCCTCCTGCCATCTTGGAGATCATGG 133313 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || || | || || ||||| || || || || || ||| |||||| || || | Sbjct 133312 CACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGA 133253 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | ||| ||||| || | || || |||||||| || | ||| || |||||||| | Sbjct 133252 AGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAG 133193 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTC---GATA-GCT-GA-GTCTATATCCC 54512 | ||| || || | || ||||| ||||| || | ||| || ||| | ||| Sbjct 133192 TGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCC 133133 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | |||| || || ||||||||||| | |||||||||||||| ||||| |||||| Sbjct 133132 A--GATG----CCGACAGCGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCTTGC 133079 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 54630 | || ||||| | ||||||| || | ||| || || || || || | ||| ||| Sbjct 133078 CATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCTTGAAGCCGAAGTATTGGTAGTTGA 133019 Query 54631 AA 54632 || Sbjct 133018 AA 133017 >seq112 Length=604763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| ||| ||| || ||||| || | | ||| | |||||||| || || | Sbjct 339670 ACAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAA 339611 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || |||||||| || ||||| || |||||||| || | ||| ||||| Sbjct 339610 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAA 339551 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATG 24310 ||| || || || || || || |||| || | | || || | | | ||| || Sbjct 339550 AATACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 339491 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTT 24341 |||||| ||||||||||||||||||| Sbjct 339490 GATCCACCGAATAGCCCAATCGGCCTTCTTT 339460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716575630960