Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq284 129 5e-25
seq342 91.5 1e-13
seq388 86.0 5e-12
>seq284
Length=28030
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || |||||||||||||| |||| ||||| ||||||
Sbjct 19906 ACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCC 19847
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| | || || |||||||| || || || ||||||||||||||| |
Sbjct 19846 AGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 19787
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| || || | |||||||||| || | ||| |||
Sbjct 19786 ATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTG 19727
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || |||||||||||
Sbjct 19726 CCGGTGAGGGTCTTGACGAAAATCTGCAT 19698
Score = 116 bits (128), Expect = 3e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| | ||||| |||||||||||
Sbjct 19161 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 19102
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||||||| |||| || ||||||||||| ||||| |||||||||||||| || ||
Sbjct 19101 CTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 19042
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
||||| | |||| |||||||| | ||||||||| | || | || || || ||
Sbjct 19041 CGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGT 18982
Query 118715 CA 118716
||
Sbjct 18981 CA 18980
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || ||||| |||||||| ||| | || || |||||| ||||| || |||
Sbjct 19438 GTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 19379
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 19378 GCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTC 19319
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| |||| ||||||||||| ||| | || ||||| || || ||
Sbjct 19318 ACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 19259
Query 118722 TTTAC 118726
|| ||
Sbjct 19258 TTGAC 19254
>seq342
Length=17698
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | |||||| |||||| ||||| ||||| ||| ||||
Sbjct 14464 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 14405
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||||| || || || |||||||| || || || || || | ||
Sbjct 14404 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 14345
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||| | ||| | || ||||| || || || || || |||
Sbjct 14344 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 14285
>seq388
Length=11445
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||| || || |||||||| ||||||| || || ||| ||
Sbjct 9248 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 9307
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| || ||||| || || || || || |||||||||||
Sbjct 9308 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTG 9367
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| | ||| ||||| | ||| | ||| ||
Sbjct 9368 GATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 9427
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || ||||||||
Sbjct 9428 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 9457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433826820492484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |