Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq24 286 3e-72 seq284 123 2e-23 seq112 91.5 1e-13 >seq24 Length=306188 Score = 286 bits (316), Expect = 3e-72 Identities = 641/957 (67%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || |||||||| || || ||||| || | |||||| | || || || || Sbjct 133940 GATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAA 133881 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| || || ||||||| || ||||||||||||| || ||||| ||| Sbjct 133880 AGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCC 133821 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| || ||| ||| | ||| | ||| || ||||| Sbjct 133820 TTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGC 133761 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACG 23264 |||| || | | ||| || |||| ||| | | ||| ||||| | ||||| | Sbjct 133760 TTCTGGGCCTTCATG-GTCTTGCG-ACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCT 133703 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || || || ||||||| || || || || ||||| | | | || ||||||||| Sbjct 133702 TCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAG 133643 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| || || || || || |||| || ||||| || ||||| || || ||| Sbjct 133642 TCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGA 133583 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || || ||||| | || || |||||| |||||| || |||||| || || | Sbjct 133582 ACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAA 133523 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||| ||||||| ||| || || || |||| ||| ||||||| Sbjct 133522 AAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGC 133463 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| || || ||||||||| | || | ||||| || | || ||| |||| Sbjct 133462 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGG 133403 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | |||| || || | || || | || || | ||| |||| || || Sbjct 133402 AGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGAC 133343 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | |||||||| || || || ||||| || || || || ||||||||||| || | Sbjct 133342 CGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGT 133283 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 |||||||||| || || | | |||| ||| || ||||||| || | | || ||| Sbjct 133282 CGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTAC 133223 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTA 23802 | || |||||| || || ||||| || | || | | | ||||| || ||||| Sbjct 133222 CCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGC--TGGACATGAGGTTGTA 133165 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | || ||||| || || || |||| ||||| ||||| ||||| Sbjct 133164 GGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCAT 133105 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || ||||||| ||| || | ||| | || || | || || || || | | || Sbjct 133104 GTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGT 133045 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || || || || | ||||| || ||||| || | || ||||| || | ||| Sbjct 133044 CTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTCCAA 132988 >seq284 Length=28030 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| || |||| || ||| | || Sbjct 19698 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 19757 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| || || |||||||| ||| | || || |||||| Sbjct 19758 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 19817 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| || | || |||| ||||| ||| Sbjct 19818 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 19877 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||| ||||| ||||| || | || | |||||| Sbjct 19878 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGT 19925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || || |||||| | || || || | ||| Sbjct 19470 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 19529 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| || | || || |||||| Sbjct 19530 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 19589 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || || || || ||| || ||| Sbjct 19590 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 19649 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| || || || |||| | || |||| Sbjct 19650 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGTA 19698 >seq112 Length=604763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 227/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || ||| || | || | || ||||| ||||| || ||||| ||||| || ||||| Sbjct 339509 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTT 339567 Query 58023 -GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| | || || ||| | ||||| || || || ||||| ||| |||| || |||||| Sbjct 339568 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGA 339627 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || || || || ||||| || || || || || || || || | |||||||| | Sbjct 339628 GCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCTCAC-T 339686 Query 58142 TGTCAATAAACCGACGCGGGAT-CGCATCTTG---GACATTATCACCGAGGCGGTCGCGA 58197 || | |||||| | | | | ||| | || || |||||||| || ||| | Sbjct 339687 TG---AAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACA 339743 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| | ||||| | ||||| || || || || | || || |||||| || Sbjct 339744 TCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACC 339803 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 | ||| | ||||| ||||||||||||||| | ||| Sbjct 339804 TCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTT 339841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762627701840