Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24 152 7e-32 seq112 91.5 2e-13 >seq24 Length=306188 Score = 152 bits (168), Expect = 7e-32 Identities = 340/503 (68%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | | Sbjct 133511 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACG 133452 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 |||| ||| ||||| || | || | | ||| ||||| | ||||||||| | || ||| Sbjct 133451 TATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTG 133392 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCC 72310 || |||| || || || ||||||| || ||| |||| |||| || || | Sbjct 133391 GTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGCCTC 133334 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 ||||||| || ||||| | || || || | || || ||||| || || || || | Sbjct 133333 CTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGT 133274 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| |||||| || || || ||| ||||| || | || || |||||||| | Sbjct 133273 CTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGA 133214 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA- 72489 | | ||| || |||||||| || ||| || |||| || ||||| ||||| | Sbjct 133213 ACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGA 133154 Query 72490 ---GCT-GAT-TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 ||| ||| || | |||| |||| || || ||||||||||| | ||| |||| Sbjct 133153 CACGCTCGATGTCGTCACCCCA--GATG----CCGACAGCGACACGCATGATCATGTGCT 133100 Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604 |||||| ||||| |||||| || || |||| | ||||||| || | ||| || | Sbjct 133099 GAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCTTGA 133040 Query 72605 AACCAAAATAGTTGTA--TGAAA 72625 | || || || | ||| ||||| Sbjct 133039 AGCCGAAGTATTGGTAGTTGAAA 133017 >seq112 Length=604763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| ||| |||||| |||||||| | | ||| | |||||||| || || | Sbjct 339670 ACAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAA 339611 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || |||||||| || ||||| || || ||||| || | ||| ||||| Sbjct 339610 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAA 339551 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 42240 || || || || || || || |||| || | || || || | | ||| || Sbjct 339550 AATACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 339491 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTT 42271 |||||| ||||||||||||||||||| Sbjct 339490 GATCCACCGAATAGCCCAATCGGCCTTCTTT 339460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133520484520