Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq24 170 3e-37 seq112 134 2e-26 >seq24 Length=306188 Score = 170 bits (188), Expect = 3e-37 Identities = 374/554 (68%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| ||| | | || |||||| | | | ||| || || | || Sbjct 133390 ACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTG-CTCG 133448 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||||||||| || || || || ||| | ||| | ||| | || || || Sbjct 133449 ATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTG 133508 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||||||||| || | || ||||||| ||| ||| ||||| || || Sbjct 133509 GCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCG 133568 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | |||||||| | || || ||| | || ||| ||||||||||||| ||| | | Sbjct 133569 CGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAA 133628 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| |||||| || ||||||||| | || ||||| || | ||||||| || Sbjct 133629 GAACGGCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGG 133688 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAG 97164 || ||||| ||| |||| | || ||||| | ||| | || |||| | Sbjct 133689 TGATGAGTTCGAGAAGCTGTACGAGAAGTATGAGCAGGCTGGCAAAGGTCGCAAGACCA- 133747 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | | |||| |||||| | |||||| || ||||||| || || || | || Sbjct 133748 -TGAAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAACCCT 133806 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| ||||||||||| | | || || || |||||||| || |||||||||| Sbjct 133807 TTCATGCTCTACAAGGACAGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACCATT 133866 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 | ||||| || ||||| || || | |||||| |||| || ||| || ||| Sbjct 133867 CGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGTGCTCCCGATGAGGTCGCTGTT 133926 Query 97344 TGCGTTCTGGCATC 97357 ||| ||| ||||| Sbjct 133927 TGCAATCTCGCATC 133940 >seq112 Length=604763 Score = 134 bits (148), Expect = 2e-26 Identities = 211/293 (72%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||| | ||| || | |||||| Sbjct 339059 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 339118 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AG---TTTAT 125134 |||||||| | |||| ||| | | |||| ||||| | || |||| || ||||| Sbjct 339119 TCCAAGGATCAACACGACTGGAACAATCGTCTGACT---TCCGA-CGAGCAGTTCTTTAT 339174 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGA 125193 || ||||| | ||||||||||||| ||| ||||| |||||||| || || | ||||| Sbjct 339175 CTCTCACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGA 339234 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 |||||| ||| | || || |||| ||| ||||| || || || |||||| Sbjct 339235 -GCGATTCAGCGGCGAGGTCCAGATCCCTGAGG-CTCGATGCTTCTATGGTTTTCAAATC 339292 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| || ||| | ||||| || | ||||| || ||||| | ||||| Sbjct 339293 ATGATGGAAAACATCCACTCTGAGACCTACTCATTGCTCATTGATACCTACAT 339345 Score = 132 bits (146), Expect = 7e-26 Identities = 335/503 (67%), Gaps = 25/503 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| |||||||||||| | ||| | || || || | ||| Sbjct 339455 ATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCATCTTTTGCC 339514 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||| || ||||| ||||| ||||| || ||||| ||| ||| ||| || Sbjct 339515 CAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTCGCGTCC 339574 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || |||||||| || |||| | |||||| | || Sbjct 339575 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATT 339634 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 ||||| || |||||||| ||| ||||| || |||| || | || ||| Sbjct 339635 TCTCGTGATGAGGGCCTGCACACCGACTTCGC-------CTGTCTC-CTACACTCT---- 339682 Query 125601 CCCGAGTGCAGATCC-AGCGATGAA-AAGGTCAT---CAACATTGTAACCGATGCCGTGA 125655 | || ||| || ||| | || || |||| | || | ||||| || || | Sbjct 339683 --CACTTGAAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCA 339740 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 || || || ||||| || ||||| | || || | | | |||||||||| Sbjct 339741 ACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGG 339800 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774 | || ||| | ||||| |||||||| || || ||||| || | | ||||| Sbjct 339801 ACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCT---TGTGGCACTTGGCA 339857 Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || ||||||||||| | || ||||| || |||||| | ||| || || | | Sbjct 339858 ACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 339917 Query 125833 GTAAGACCAACTTTTTCGAGAAG 125855 | ||||||||||| ||||||||| Sbjct 339918 GCAAGACCAACTTCTTCGAGAAG 339940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052928786520