Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq126 107 3e-19 seq182 98.7 2e-16 >seq126 Length=81464 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 26226 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 26284 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 26285 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 26325 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | |||| ||||||| || || |||| ||||| Sbjct 26381 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATG 26440 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 26441 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 26500 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 26501 CTCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 26544 >seq182 Length=59117 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 54142 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTAT 54200 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 || ||||| ||||||||||| || ||||||||| | |||| Sbjct 54201 TCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 54241 Score = 95.1 bits (104), Expect = 2e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| |||||| ||||||| || || |||| || | Sbjct 54300 TGATCTACGAGGAGACCCGTGGTGTTCTGAAGACCTTCCTCGAGGGAGTCATCCGCGACG 54359 Query 16596 CT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || || || ||||||||||| || || ||||| ||||| ||| | ||| ||||||| Sbjct 54360 CTGTTACA-TACACCGAGCACGCCAAGCGAAAGACCGTCACATCCCTCGATGTCGTCTAC 54418 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | || || |||||||| | | || || || || ||||| ||| Sbjct 54419 GCCCTCAAGCGACAAGGCCGCACCCTGTACGGATTCGGTGGTTAAACTT 54467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074581014161