Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq24 322 1e-82 >seq24 Length=306188 Score = 322 bits (356), Expect = 1e-82 Identities = 1054/1623 (65%), Gaps = 20/1623 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | ||||| ||| |||||| || || | | | || ||| ||||||| Sbjct 133189 TTCACTCACGCTTCACCAACCCTGTTCAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCC 133248 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||| ||||||| ||||| || |||| | Sbjct 133249 TGCTTCCTGGTTGACATGAAGGAAGACAGCATCGACGGTATCTACGACACCCTCAAGACT 133308 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| ||||| || || ||| | | || | ||| | ||||| Sbjct 133309 TGTGCCATGATCTCCAAGATGGCAGGAGGCATCGGTCTCAACG-TGCACCGAATCCGTGC 133367 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| ||| || || ||| ||||| | |||| ||||| | Sbjct 133368 CACCGG-CTCTTACATTGCCGGTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCC 133426 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || |||| ||||| | |||||||||||||| || ||||| || || | Sbjct 133427 GTGTCTTCAACAACACTGCTCGATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTT 133486 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || || ||||| || ||||| ||||||| || | || || || || | Sbjct 133487 TCGCCATTTACCTTGAGCCCTGGCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGA 133546 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || || ||| || || ||||| |||||| || || ||| | | || | Sbjct 133547 ACCACGGCAAGGAAGAAGCCCGCGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGATC 133606 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || ||| | | | | | ||| | ||| | ||||| | || || Sbjct 133607 TGTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAATGAGTG 133664 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || ||| | ||| | ||||| || | | || ||||| |||||||| Sbjct 133665 CCCCGGGCTTGCTGATTGCTACGGTGATGAGTTCGAGAAGCTGTACGAGAAGTATGAGCA 133724 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || || | ||| ||||| || || |||||||| |||| ||||||| |||| | Sbjct 133725 GGCTGGCAAAGGTCGCAAGACCATGAAGGCCCAGAAGCTGTGGTATGCCATCTTGGAGGC 133784 Query 364143 GCAGATTGAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 |||| || || || | ||||| | ||| | ||||| || |||||||| || || Sbjct 133785 TCAGACCGAAACCGGCA-ACCCTTTCATGCTCTACAAGGACAGCTGCAACCGTAAAAGCA 133843 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || |||| |||| |||||| || || ||||| || || ||| Sbjct 133844 ACCAGAAGAACCTGGGCACCATTC-GCAGTTCCAACCTTTGCACTGAGATCATCGAGTAC 133902 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 |||||||| ||| || || || || || || || | || || || | ||||| Sbjct 133903 TGTGCTCCCGATGAGGTCGCTGTTTGCAATCTCGCATCATTGGCTCTGCCTTCCTTTGTT 133962 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 || || || | ||| |||| | || | || || || | || Sbjct 133963 GACTACAACGAGGGCTGCTACGACTTCCAGAAGCTACACGAGGTCACACAGGTTGTCGTC 134022 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 |||| | ||||| |||||||| || | || || || || ||| Sbjct 134023 CGCAACTTGAACAAGATTATCGACGTCAACCACTACCCCATCATCGAGGCCCGCAACAGC 134082 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || |||||||| || || |||||| | ||||| ||||| || ||||| | || || Sbjct 134083 AACATGCGTCACCGACCCATTGGTGTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCT 134142 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 || ||| | || || || || || ||||||| | || ||| |||||||||| || Sbjct 134143 CTTCGCATGCCCTTCGAGTCCCCCGAGGCTCGTGAGTTGAACAAGCAGATCTTTGAGACC 134202 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTC 364613 || || || || |||| || ||| ||| | | || || |||| ||||| Sbjct 134203 ATTTACCACGCTGCTTTGACGGCCTCG-GTGCAACTCGCTAAGGAGGAGGGTCCTTACTC 134261 Query 364614 TACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCAC 364673 || | |||| ||||| || |||| | ||||||||||| | ||||| || | Sbjct 134262 TAGCTTCAAGGGTTCCCCAGCATCTGAGGGTATCCTCCAGTTTGATATGTGGAACGTGAA 134321 Query 364674 GCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCG 364733 ||| || | || ||| ||||||| || || || | |||||| |||| |||| ||| Sbjct 134322 GCCCTCCGACCTTTGGGACTGGGAGACCCTTCGCGAGCAGGTTAAGGAGCACGGTATTCG 134381 Query 364734 CAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAA 364793 |||| | | || || || ||||| || || |||| | |||||||| || || || Sbjct 134382 CAACAGCTTGCTTCTCGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAATAA 134441 Query 364794 CGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATT 364853 ||| |||||||| || | ||| || | || ||||| || ||| | || || || Sbjct 134442 CGAATGCTTCGAGCCTTATACCTCGAACATCTACCAGCGCCGTGTCCTTGCTGGTGAGTT 134501 Query 364854 TCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG 364913 | ||| ||||| | || | ||||| || || || ||||| || Sbjct 134502 CCAGGTTGTTAACCCCTGGCTCTTGAAGGACCTGGTAGATATGGGCTTGTGGTCGGATGC 134561 Query 364914 CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA 364973 |||||||||| ||||| | | || |||||| | |||||||| || |||| || Sbjct 134562 CATGAAGAACCGCATCATTTCTGAGAACGGTTCTATCCAGAACATCCCTAACATTCCGGA 134621 Query 364974 AGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATAT 365033 || | ||| | | ||||| || || ||||| |||||| || || | | || Sbjct 134622 CGACATTAAGTCGCTCTACAAGACGGTGTGGGAGATTTCCCAACGCCAGGTCCTCCAAAT 134681 Query 365034 GGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCA 365093 | | |||||||| ||||| || ||| |||| ||||| | ||| | ||||| | Sbjct 134682 GTCCGCCGATCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTCAACATCCACATGAAAGA 134741 Query 365094 GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGAC 365153 || || | |||| | || |||||| ||| || ||||| |||||| ||||| Sbjct 134742 CCCCACAATGGGCAAGATCACCAGCATGCACTTCGCAGGCTGGAAGCTCGGTCTCAAGAC 134801 Query 365154 AGG 365156 || Sbjct 134802 CGG 134804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342294629414