Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq264 140 2e-28 seq112 132 3e-26 >seq264 Length=31570 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 29963 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 29904 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 29903 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 29869 >seq112 Length=604763 Score = 132 bits (146), Expect = 3e-26 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||||| ||||| |||||||| ||| ||||||| ||||| | || || || |||||| Sbjct 400487 GACGCCTTCTATCGCTACAAGATGGAGCGCATCCAGACCAAGATTGAAGGCAAAGGAAAC 400428 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || |||||| | |||||| || || || || | |||| ||||||| | Sbjct 400427 GGCATCAAGACCGTCGTCGTCAACTTGAGCAGCGTTGCCAACTCCCTCGCTCGCCCTGGC 400368 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | ||| | ||||| ||||| | ||| ||||| |||||||| | | |||| ||| Sbjct 400367 GCATACGTCATCAAATACTTCGGTTTCGAGCTTGGTGCTCAGACAAACATCGATCCCAAG 400308 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | || |||||||| || ||| || || Sbjct 400307 GACGACCGTTGGATCATCAACGGCGCCCACGATTCCGCCAAGCTCCAAGACCACCTCGAT 400248 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || || || ||||||||| || || | | ||| | |||||||||||||| Sbjct 400247 GGTTTCATCAACAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCGGAGACCGA 400195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944436371587