Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq24 156 5e-33 seq112 95.1 2e-14 >seq24 Length=306188 Score = 156 bits (172), Expect = 5e-33 Identities = 438/665 (66%), Gaps = 18/665 (3%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || |||| || ||||| | | ||| || |||| | || || || ||| Sbjct 133673 AGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTC 133614 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || ||||| || ||||| || || | || | || | | | ||| || || Sbjct 133613 ATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTG 133554 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| | ||| | | || || | ||||| || || | ||| Sbjct 133553 CCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAA 133494 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||||| ||| ||||| || Sbjct 133493 ATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTG 133434 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| ||||| | ||||||||| || || ||||| || | || || Sbjct 133433 AAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAG 133374 Query 63320 CCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | | |||| |||| || || |||||||| || ||||| | Sbjct 133373 CCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGCCTCCTGCCATCTTGGAGATCA 133316 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || || | || || ||||| || || || || || ||| |||||| || | Sbjct 133315 TGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCA 133256 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || ||| ||||| || | || || |||||||| || | ||| || ||||||| Sbjct 133255 GGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGT 133196 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC----AATAGCT-GA-GTCTATAT 63551 |||| ||| || || | || ||||| ||||| | ||| || ||| | Sbjct 133195 GAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCAC 133136 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 |||| |||| || || ||||||||||| | |||||||||||||| ||||| |||| Sbjct 133135 CCCA--GATG----CCGACAGCGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCT 133082 Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 63669 || | || |||| | ||||||| || | ||| || || || || || | ||| Sbjct 133081 TGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCTTGAAGCCGAAGTATTGGTAGT 133022 Query 63670 TGAAA 63674 ||||| Sbjct 133021 TGAAA 133017 >seq112 Length=604763 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| ||| ||| || ||||| || | | ||| | |||||||| || || | Sbjct 339670 ACAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAA 339611 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| || |||||||| || ||||| || |||||||| || | ||| ||||| Sbjct 339610 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAA 339551 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 32836 ||| || || || || || || |||| || | || || || | | | ||| || Sbjct 339550 AATACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 339491 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTT 32867 |||||| ||||||||||||||||||| Sbjct 339490 GATCCACCGAATAGCCCAATCGGCCTTCTTT 339460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626637889200