Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq388 98.7 9e-16
seq284 93.3 4e-14
>seq388
Length=11445
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | ||||| | || |||||||| ||
Sbjct 9457 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 9398
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| | ||| || ||| ||||| || || ||||| || ||||||
Sbjct 9397 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAA 9338
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| || |||||||| || | ||||||| || || || |||| |||||
Sbjct 9337 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAAC 9278
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||| || || | |||||
Sbjct 9277 ATCCAGAAGGAGAGCACTCTTCACCTGGTGCT 9246
>seq284
Length=28030
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||||||||| | ||||| | || |||||||| ||
Sbjct 19470 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 19529
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||| | || | ||| || || || || || || || |||
Sbjct 19530 GACACGATCGA--CAATGTCAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCCCCAGAC 19586
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||| || || | || |||| || || || ||| |||
Sbjct 19587 CAGCAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTAC 19646
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || || ||
Sbjct 19647 AACATCCAGAAGGAGTCAACTCTTCA 19672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324424637755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |