Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq663 104 5e-17 seq112 102 2e-16 seq58 95.1 2e-14 >seq663 Length=163754 Score = 104 bits (114), Expect = 5e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 279327 GAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386 ||| |||| |||| |||||||| || || ||||| |||||| ||||| || ||| Sbjct 15508 GAGGAGGACGATGAGGAGGGTGAGGACCTTTGCAACTGTACTTTCTCCCTCGCCTACGGT 15449 Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446 | |||||||| || ||| |||| ||| | ||||||||||| | || || ||||| Sbjct 15448 GCCAAGATTCTCCTCAACCAGACCCATCTCCGCCTCAAGCGTGGCCAGCGTTACGGTCTT 15389 Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506 ||| ||||| || | || ||| || || ||||| ||||| |||| ||| | Sbjct 15388 TGCGGCCCCAACGGTTCTGGCAAGTCAACCCTCATGCGTGCCATCAACAACGAGCAGGTC 15329 Query 279507 GAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || || ||||| ||| ||||| | ||| || | || ||||||||| | ||||| Sbjct 15328 GAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 15270 Query 279566 C 279566 | Sbjct 15269 C 15269 >seq112 Length=604763 Score = 102 bits (112), Expect = 2e-16 Identities = 299/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 339936 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 339877 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAG 251681 | ||||| ||| | ||||||||| || |||| | ||||| || |||||||| | Sbjct 339876 GACTTGTAAATCTTCTCGTTGCCAAGTGCCAC-AAGAAGACGGTCGGCAACAAACTCGAT 339818 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 || || ||| || || ||||||||||| | | | ||||| | |||||| | Sbjct 339817 GTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCAAGGCAGTGCCTCGGTCAG 339758 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTG-CCAG--AGA 251798 ||| |||| ||| || || || || | || |||| || | | | Sbjct 339757 GAACTCCTGCTCGATGTTGACAGCGTCGGTGA----TGATCTCACGAATGATCTGCTTGC 339702 Query 251799 CAGCT-TGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||| ||||| || | |||| ||||| | | || | |||||| ||||| | Sbjct 339701 TGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTCAT 339642 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| |||| ||||||||| | || ||||||||| | ||||| ||| |||||| Sbjct 339641 CACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAGCC 339582 Query 251918 AGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||||| | ||| |||| | ||| ||| | | |||||| || | | ||||| Sbjct 339581 AGAAGATGGACGCGAAAGCA-CCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAACC 339523 Query 251977 AGGCGCTCAGCAAACGA------CTTGTCCTG 252002 || |||| ||||| || ||||||||| Sbjct 339522 AGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 339491 >seq58 Length=109527 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || |||||||||||||||||||||||||| || ||| | || ||||| || | | Sbjct 19811 GTTGGCTCCCTGTCGGGTGGTTGGAAGATGAAGCTTGCTCTCGCCCGAGCCATGCTCCAG 19752 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || || || || || || || || || || ||||| | || ||||||| | ||| Sbjct 19751 CGCGCTGACGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTCACCAACATCGCC 19692 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | ||||||| Sbjct 19691 TGGCTGGAAACCTACCT 19675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827884479357