Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq663 104 5e-17
seq112 102 2e-16
seq58 95.1 2e-14
>seq663
Length=163754
Score = 104 bits (114), Expect = 5e-17
Identities = 169/241 (70%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 279327 GAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386
||| |||| |||| |||||||| || || ||||| |||||| ||||| || |||
Sbjct 15508 GAGGAGGACGATGAGGAGGGTGAGGACCTTTGCAACTGTACTTTCTCCCTCGCCTACGGT 15449
Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446
| |||||||| || ||| |||| ||| | ||||||||||| | || || |||||
Sbjct 15448 GCCAAGATTCTCCTCAACCAGACCCATCTCCGCCTCAAGCGTGGCCAGCGTTACGGTCTT 15389
Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506
||| ||||| || | || ||| || || ||||| ||||| |||| ||| |
Sbjct 15388 TGCGGCCCCAACGGTTCTGGCAAGTCAACCCTCATGCGTGCCATCAACAACGAGCAGGTC 15329
Query 279507 GAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| || || ||||| ||| ||||| | ||| || | || ||||||||| | |||||
Sbjct 15328 GAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 15270
Query 279566 C 279566
|
Sbjct 15269 C 15269
>seq112
Length=604763
Score = 102 bits (112), Expect = 2e-16
Identities = 299/452 (66%), Gaps = 18/452 (4%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |
Sbjct 339936 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 339877
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAG 251681
| ||||| ||| | ||||||||| || |||| | ||||| || |||||||| |
Sbjct 339876 GACTTGTAAATCTTCTCGTTGCCAAGTGCCAC-AAGAAGACGGTCGGCAACAAACTCGAT 339818
Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741
|| || ||| || || ||||||||||| | | | ||||| | |||||| |
Sbjct 339817 GTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCAAGGCAGTGCCTCGGTCAG 339758
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTG-CCAG--AGA 251798
||| |||| ||| || || || || | || |||| || | | |
Sbjct 339757 GAACTCCTGCTCGATGTTGACAGCGTCGGTGA----TGATCTCACGAATGATCTGCTTGC 339702
Query 251799 CAGCT-TGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857
||| ||||| || | |||| ||||| | | || | |||||| ||||| |
Sbjct 339701 TGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTCAT 339642
Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917
| ||| |||| ||||||||| | || ||||||||| | ||||| ||| ||||||
Sbjct 339641 CACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAGCC 339582
Query 251918 AGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976
||||||| | ||| |||| | ||| ||| | | |||||| || | | |||||
Sbjct 339581 AGAAGATGGACGCGAAAGCA-CCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAACC 339523
Query 251977 AGGCGCTCAGCAAACGA------CTTGTCCTG 252002
|| |||| ||||| || |||||||||
Sbjct 339522 AGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 339491
>seq58
Length=109527
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || |||||||||||||||||||||||||| || ||| | || ||||| || | |
Sbjct 19811 GTTGGCTCCCTGTCGGGTGGTTGGAAGATGAAGCTTGCTCTCGCCCGAGCCATGCTCCAG 19752
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| || || || || || || || || || || ||||| | || ||||||| | |||
Sbjct 19751 CGCGCTGACGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTCACCAACATCGCC 19692
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | |||||||
Sbjct 19691 TGGCTGGAAACCTACCT 19675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027827884479357
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |